Parental gene: | RPS27A, ENSG00000143947 |
| Aliases: | RPS27A, CEP80, HEL112, S27A, UBA80, UBC, UBCEP1, UBCEP80 |
| Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:55459038..55462989(+) |
>ENSG00000143947
ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAA
GGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAC
GTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATAA
GGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCTTCTGATGAATGTGGTGCTGGGGTGTTTATGGCAA
GTCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGTTTCAACAAACCAGAAGACAAGTAA
ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAA
GGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAC
GTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTACACCACTCCCAAGAAGAATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAATATTATAA
GGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCTTCTGATGAATGTGGTGCTGGGGTGTTTATGGCAA
GTCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGTTTCAACAAACCAGAAGACAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 197 .57 RPM |
| bodymap2_lung | 575 .35 RPM |
| bodymap2_breast | 255 .72 RPM |
| bodymap2_adipose | 241 .34 RPM |
| bodymap2_adrenal | 445 .31 RPM |
| bodymap2_skeletal_muscle | 147 .09 RPM |
| bodymap2_thyroid | 244 .64 RPM |
| bodymap2_prostate | 709 .26 RPM |
| bodymap2_colon | 539 .62 RPM |
| bodymap2_testis | 329 .65 RPM |
| bodymap2_brain | 168 .49 RPM |
| bodymap2_heart | 135 .97 RPM |
| bodymap2_white_blood_cells | 847 .09 RPM |
| bodymap2_lymph_node | 651 .95 RPM |
| bodymap2_ovary | 554 .21 RPM |
| bodymap2_kidney | 283 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004017 | ortholog_one2one | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000023471 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010052 | possible_ortholog | 5 retrogenes | |
| Felis catus | ENSFCAG00000023939 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000023133 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000008917 | ortholog_one2one | 13 retrogenes | |
| Myotis lucifugus | ENSMLUG00000017064 | possible_ortholog | 10 retrogenes | |
| Myotis lucifugus | ENSMLUG00000029449 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015563 | ortholog_one2one | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000001819 | possible_ortholog | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000010468 | ortholog_one2one | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003613 | possible_ortholog | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000025871 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011928 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004426 | possible_ortholog | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000022357 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009566 | possible_ortholog | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013947 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_276 | 95.51 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1694 | 98.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1715 | 89.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_2217 | 70.93 | 55.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_2416 | 91.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3344 | 82.58 | 84.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_3508 | 91.72 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_4272 | 78.95 | 97.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_4649 | 88.03 | 75.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_4650 | 71.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000143947 retrocopies