Parental gene: | LSM3, ENSG00000170860 |
| Aliases: | None |
| Description: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 3:14219857..14242619(+) |
>ENSG00000170860
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCCTAGATGA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGATTACATGCTTATGATCAACATTTAAATATGATCT
TGGGAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTCCTGGTTGCCCCTCCACTGAGAGTTGGCTGA
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCCTAGATGA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGATTACATGCTTATGATCAACATTTAAATATGATCT
TGGGAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTCCTGGTTGCCCCTCCACTGAGAGTTGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 22 .52 RPM |
| bodymap2_lung | 28 .69 RPM |
| bodymap2_breast | 39 .14 RPM |
| bodymap2_adipose | 25 .19 RPM |
| bodymap2_adrenal | 47 .00 RPM |
| bodymap2_skeletal_muscle | 22 .73 RPM |
| bodymap2_thyroid | 48 .94 RPM |
| bodymap2_prostate | 46 .78 RPM |
| bodymap2_colon | 41 .96 RPM |
| bodymap2_testis | 79 .54 RPM |
| bodymap2_brain | 38 .79 RPM |
| bodymap2_heart | 33 .58 RPM |
| bodymap2_white_blood_cells | 32 .68 RPM |
| bodymap2_lymph_node | 30 .75 RPM |
| bodymap2_ovary | 33 .27 RPM |
| bodymap2_kidney | 44 .53 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000007363 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016977 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006671 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018032 | ortholog_one2one | 7 retrogenes | |
| Echinops telfairi | ENSETEG00000016207 | ortholog_one2one | 8 retrogenes | |
| Loxodonta africana | ENSLAFG00000023308 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023126 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011088 | possible_ortholog | 1 retrogene | |
| Oreochromis niloticus | ENSONIG00000000370 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013402 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000014650 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000008733 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000011601 | possible_ortholog | 6 retrogenes | |
| Tursiops truncatus | ENSTTRG00000011197 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1045 | 83.52 | 89.22 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1654 | 85.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1839 | 65.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_2286 | 90.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_2986 | 75.79 | 93.14 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000170860 retrocopies