Parental gene: | ENSSSCG00000011601 |
| Aliases: | None |
| Description: | None |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 13:77737228..77746395(-) |
>ENSSSCG00000011601
ATGGCGGACGACGTGGACCAGCAACAAACTACCAACACTGTAGAAGAGCCCCTGGATCTCATCAGACTCAGCCTGGATGA
GCGAATCTATGTGAAAATGAGAAATGACAGAGAGCTTCGAGGCAGGTTACATGCGTATGATCAGCACTTAAATATGATAT
TGGGAGATGTGGAAGAAACTGTGACAACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACAAAACGG
AATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTGCTAGTTGCCCCACCGTTGAGAGTTGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 3 .45 RPM |
| SRP014902_testis | 14 .85 RPM |
| SRP018288_heart | 26 .40 RPM |
| SRP018288_kidney | 45 .41 RPM |
| SRP018288_liver | 15 .67 RPM |
| SRP018288_lung | 13 .44 RPM |
| SRP018856_adipose | 34 .58 RPM |
| SRP035408_brain | 37 .92 RPM |
| SRP035408_liver | 45 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009405 | possible_ortholog | 3 retrogenes | |
| Bos taurus | ENSBTAG00000007363 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016977 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006671 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018032 | ortholog_one2many | 7 retrogenes | |
| Echinops telfairi | ENSETEG00000016207 | ortholog_one2many | 8 retrogenes | |
| Homo sapiens | ENSG00000170860 | possible_ortholog | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010006 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000023308 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010677 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000023126 | possible_ortholog | 5 retrogenes | |
| Monodelphis domestica | ENSMODG00000007275 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000034192 | possible_ortholog | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005079 | possible_ortholog | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011088 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007659 | possible_ortholog | 6 retrogenes | |
| Oreochromis niloticus | ENSONIG00000000370 | ortholog_many2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013402 | possible_ortholog | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000014650 | possible_ortholog | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016795 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008733 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006842 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001050 | possible_ortholog | 11 retrogenes | |
| Tursiops truncatus | ENSTTRG00000011197 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000010709 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_64 | 77.32 | 95.10 | Please wait, loading  |
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| 2. | retro_sscr_395 | 77.45 | 100.00 | Please wait, loading |
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| 3. | retro_sscr_396 | 77.45 | 100.00 | Please wait, loading |
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| 4. | retro_sscr_457 | 75.00 | 78.43 | Please wait, loading |
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| 5. | retro_sscr_1134 | 77.45 | 100.00 | Please wait, loading |
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| 6. | retro_sscr_1140 | 80.00 | 98.04 | Please wait, loading |
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Download FASTA sequences of all ENSSSCG00000011601 retrocopies