RetrogeneDB ID: | retro_etel_1852 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_30800:923..1229(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM3 | ||
Ensembl ID: | ENSETEG00000016207 | ||
Aliases: | None | ||
Description: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874] |
Percent Identity: | 93.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET |
MADDVDQQQTTNTVEEPL.LI.LSLDE.I.VKMRNDR.LRGRLHAY.QHLNMIL.DVEETVTTIEIDEET | |
Retrocopy | MADDVDQQQTTNTVEEPLHLIGLSLDEHI*VKMRNDRGLRGRLHAYGQHLNMILRDVEETVTTIEIDEET |
Parental | YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG |
YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG | |
Retrocopy | YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |