RetrogeneDB ID: | retro_ocun_126 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:86876000..86876309(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027653 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000011088 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADDVDQYYNPRTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET |
MADDVDQ.....TVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET | |
Retrocopy | MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET |
Parental | YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG |
YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG | |
Retrocopy | YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .77 RPM | 2 .15 RPM |
SRP017611_kidney | 1 .62 RPM | 3 .04 RPM |
SRP017611_liver | 0 .46 RPM | 0 .77 RPM |