RetrogeneDB ID: | retro_etel_833 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_172055:257..560(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM3 | ||
Ensembl ID: | ENSETEG00000016207 | ||
Aliases: | None | ||
Description: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874] |
Percent Identity: | 71.84 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELR-GRLHAYDQHLNMILGDVEETVTTIEIDEE |
M.DDVDQQQTTN.VEEPLDLIRLSLDE.I..K..ND.EL..GRLHA.DQ.LNMILGDVE..VTT..IDE. | |
Retrocopy | MVDDVDQQQTTNAVEEPLDLIRLSLDEHIDAKI*ND*ELQ<GRLHADDQRLNMILGDVEDAVTTRKIDEK |
Parental | TYEEIYKSTKRNIPMLFVRGDGVVL-VAPPLRV |
..EEIYK..K..IPML.V.GDGVVL..AP.LR. | |
Retrocopy | RDEEIYK*MKWIIPMLCVWGDGVVL>AAPLLRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |