Parental gene:

SMN2, ENSG00000205571

Aliases:SMN2, BCD541, C-BCD541, GEMIN1, SMNC, TDRD16B
Description:survival of motor neuron 2, centromeric [Source:HGNC Symbol;Acc:11118]
Organism:Human (Homo sapiens)
Coordinates:5:69345349..69374349(+)


>ENSG00000205571
ATGGCGATGAGCAGCGGCGGCAGTGGTGGCGGCGTCCCGGAGCAGGAGGATTCCGTGCTGTTCCGGCGCGGCACAGGCCA
GAGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAGCATGCTC
TAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGC
CAAAAGAAGAATACTGCAGCTTCCTTACAACAGTGGAAAGTTGGGGACAAATGTTCTGCCATTTGGTCAGAAGACGGTTG
CATTTACCCAGCTACCATTGCTTCAATTGATTTTAAGAGAGAAACCTGTGTTGTGGTTTACACTGGATATGGAAATAGAG
AGGAGCAAAATCTGTCCGATCTACTTTCCCCAATCTGTGAAGTAGCTAATAATATAGAACAAAATGCTCAAGAGAATGAA
AATGAAAGCCAAGTTTCAACAGATGAAAGTGAGAACTCCAGGTCTCCTGGAAATAAATCAGATAACATCAAGCCCAAATC
TGCTCCATGGAACTCTTTTCTCCCTCCACCACCCCCCATGCCAGGGCCAAGACTGGGACCAGGAAAGCCAGGTCTAAAAT
TCAATGGCCCACCACCGCCACCGCCACCACCACCACCCCACTTACTATCATGCTGGCTGCCTCCATTTCCTTCTGGACCA
CCAATAATTCCCCCACCACCTCCCATATGTCCAGATTCTCTTGATGATGCTGATGCTTTGGGAAGTATGTTAATTTCATG
GTACATGAGTGGCTATCATACTGGCTATTATATGGGTTTTAGACAAAATCAAAAAGAAGGAAGGTGCTCACATTCCTTAA
ATTAA

Library Parental gene expression (RPM)
bodymap2_liver 1 .25 RPM
bodymap2_lung 3 .01 RPM
bodymap2_breast 5 .08 RPM
bodymap2_adipose 3 .32 RPM
bodymap2_adrenal 3 .93 RPM
bodymap2_skeletal_muscle 0 .95 RPM
bodymap2_thyroid 2 .82 RPM
bodymap2_prostate 5 .06 RPM
bodymap2_colon 2 .32 RPM
bodymap2_testis 3 .60 RPM
bodymap2_brain 1 .85 RPM
bodymap2_heart 2 .12 RPM
bodymap2_white_blood_cells 3 .41 RPM
bodymap2_lymph_node 1 .96 RPM
bodymap2_ovary 3 .93 RPM
bodymap2_kidney 3 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000012328 ortholog_one2many 1 retrogene
retro_cpor_988,
Dasypus novemcinctus ENSDNOG00000007283 ortholog_one2many 4 retrogenes
retro_dnov_1239, retro_dnov_1613, retro_dnov_1637, retro_dnov_2175,
Echinops telfairi ENSETEG00000001406 ortholog_one2many 2 retrogenes
retro_etel_1549, retro_etel_2012,
Gorilla gorilla ENSGGOG00000026704 ortholog_many2many 1 retrogene
retro_ggor_2780,
Myotis lucifugus ENSMLUG00000010603 ortholog_one2many 1 retrogene
retro_mluc_1623,
Macaca mulatta ENSMMUG00000020214 ortholog_many2many 1 retrogene
retro_mmul_216,
Nomascus leucogenys ENSNLEG00000004454 ortholog_one2many 1 retrogene
retro_nleu_1054,
Oryctolagus cuniculus ENSOCUG00000017097 ortholog_many2many 1 retrogene
retro_ocun_617,
Pan troglodytes ENSPTRG00000016955 ortholog_one2many 1 retrogene
retro_ptro_2813,
Sus scrofa ENSSSCG00000016970 ortholog_many2many 1 retrogene
retro_sscr_654,
Ictidomys tridecemlineatus ENSSTOG00000012288 ortholog_one2many 1 retrogene
retro_itri_968,
Tupaia belangeri ENSTBEG00000002399 ortholog_one2many 1 retrogene
retro_tbel_1033,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4140 73.86 59.52
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Download FASTA sequences of all ENSG00000205571 retrocopies