RetrogeneDB ID:

retro_etel_2012

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_324612:4886..5483(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000001406
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_2012
ATGGGTGGCGGCGGCGGCGTTCTGGAGCGGGAAGACGCCGCGCTGTTCCTGCGTGGAAGAGGCCAGAGCGATGACTCTGA
CTTGTGGGATGATGCAGCATTGGTCAAAGCCTATGATAAGGCTGTAGCTTCCTTTAAGAATGCTCTAAAGAATGGAGAAA
TTTGTGAAGCTACTGACAAACCAACACTCACACCTAAAAGAAAGCCTACTAAGAAGAAAAAGACCGTCATGACTCCACTG
AAGCAGTGGAAAGTTGGTGATAAATGTTCCGCCATTTGGTCAGAAGATGGCTGCATTTACCCAGCTACCATCACTTCAGT
TGATCATAATAGAGAAACTTGTGTTGTGGTTTACACCGGATATGGAAACAGAGAGGAGCAACATCTGTCTGATCTACTTC
TCCCAACCTTTGGAGGAGTTCATAATGTAGACCAGAATGCTCAAGAGAATGAAAACGAAAGTCAAATTTCAACAGATGAA
AGTGAGAGTTCCTCCAGGTCTCTTGGAAACAAACCAAATACCAAGTCTAAAGCCGCACCATGGAGCTCCCCCTACCCCAC
CCCTCCAATGCAGGCATCCGGGCTGGGGCCAGGAAAG

ORF - retro_etel_2012 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.45 %
Parental protein coverage: 99.02 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGGGGGVPEREDAVLFRR-TGQTEDADIGDDTALIKAYDKAVASSKNALKNGEICEATDKPKLTPKRKPT
MGGGGGV.EREDA.LF.R..GQ..D.D..DD.AL.KAYDKAVAS.KNALKNGEICEATDKP.LT....P.
RetrocopyMGGGGGVLEREDAALFLRGRGQSDDSDLWDDAALVKAYDKAVASFKNALKNGEICEATDKPTLT----PK
ParentalKKKKXXXXXXXXXXXXWKVGDKCSAIWSEDGCIYPATLTSVDLTRETCVVVDTGYGN-EEQRLSDLLLPT
.K..............WKVGDKCSAIWSEDGCIYPAT.TSVD..RETCVVV.TGYGN.EEQ.LSDLLLPT
RetrocopyRKPTKKKKTVMTPLKQWKVGDKCSAIWSEDGCIYPATITSVDHNRETCVVVYTGYGNREEQHLSDLLLPT
ParentalFGGVHNVDQNAQENENESQISTDESESSSRSLGNKPNTKSKAAPWSSFLPPPPPMPASGMGPGK
FGGVHNVDQNAQENENESQISTDESESSSRSLGNKPNTKSKAAPWSS...P.PPM.ASG.GPGK
RetrocopyFGGVHNVDQNAQENENESQISTDESESSSRSLGNKPNTKSKAAPWSSPY-PTPPMQASGLGPGK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2012 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000123281 retrocopy
Dasypus novemcinctus ENSDNOG000000072834 retrocopies
Echinops telfairi ENSETEG00000001406 2 retrocopies
retro_etel_1549, retro_etel_2012 ,
Homo sapiens ENSG000002055711 retrocopy
Gorilla gorilla ENSGGOG000000267041 retrocopy
Myotis lucifugus ENSMLUG000000106031 retrocopy
Macaca mulatta ENSMMUG000000202141 retrocopy
Nomascus leucogenys ENSNLEG000000044541 retrocopy
Oryctolagus cuniculus ENSOCUG000000170971 retrocopy
Pan troglodytes ENSPTRG000000169551 retrocopy
Sus scrofa ENSSSCG000000169701 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000122881 retrocopy
Tupaia belangeri ENSTBEG000000023991 retrocopy



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