RetrogeneDB ID: | retro_sscr_654 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:159523239..159523974(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMN1 | ||
Ensembl ID: | ENSSSCG00000016970 | ||
Aliases: | None | ||
Description: | Sus scrofa survival of motor neuron 1, telomeric (SMN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001130735] |
Percent Identity: | 83.81 % |
Parental protein coverage: | 82.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KHALKNGDISEASDKPKATPKRKPPKKNKSQKKNTTASLKQWKVGDRCSAIWSEDGCIYPATIASIDFKR |
...LKN.DISEASDKPK.TPKR.P.KKNKSQK.NT.A.LKQWKVGDR.SA.W.EDGCIYPATIA.IDFKR | |
Retrocopy | QYTLKNSDISEASDKPKGTPKR*PAKKNKSQKNNTIAPLKQWKVGDRYSAVWLEDGCIYPATIALIDFKR |
Parental | ETCIVVYTGYGNREEQNLSDLLS-PTSEVANNIEENAQENENESQISTDESESSSRSPGNKPNNIKSKAA |
ETCIV.Y..YGNRE.QNLSDLLS.P...VANNIEENA.ENENESQISTDESESSSRSPG.K..NIKSKAA | |
Retrocopy | ETCIVFYNVYGNREKQNLSDLLS<PALDVANNIEENALENENESQISTDESESSSRSPGSKSSNIKSKAA |
Parental | PWNSFLPPPPPMPGAGLGPRKPGLKFNGPPPP--PPPPPHFLSCWLPPFPSGPPIIPP-PPPICPDSLDD |
PWNSFL.PP.PMPGAGLGPRKPGLKFNGPPPP...P.P.HFL.CWLPPFPSGPPIIPP..PPI.PDSLDD | |
Retrocopy | PWNSFLLPPLPMPGAGLGPRKPGLKFNGPPPPLLLPTPLHFLLCWLPPFPSGPPIIPP>TPPI*PDSLDD |
Parental | ADALGSMLISWYMSGYHTGYYMGFKQNQKEGRCSHFN |
ADAL.SMLIS.YM.GYHTGYYMGFKQNQKEGRCSHFN | |
Retrocopy | ADALRSMLISQYMNGYHTGYYMGFKQNQKEGRCSHFN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 9 .69 RPM |
SRP014902_testis | 0 .00 RPM | 22 .35 RPM |
SRP018288_heart | 0 .00 RPM | 17 .08 RPM |
SRP018288_kidney | 0 .00 RPM | 37 .83 RPM |
SRP018288_liver | 0 .00 RPM | 25 .59 RPM |
SRP018288_lung | 0 .00 RPM | 27 .29 RPM |
SRP018856_adipose | 0 .09 RPM | 33 .25 RPM |
SRP035408_brain | 0 .00 RPM | 30 .39 RPM |
SRP035408_liver | 0 .00 RPM | 20 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000012328 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007283 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000001406 | 2 retrocopies | |
Homo sapiens | ENSG00000205571 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026704 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010603 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020214 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004454 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017097 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016955 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016970 | 1 retrocopy |
retro_sscr_654 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012288 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002399 | 1 retrocopy |