Parental gene:

PPP3R1, ENSMMUG00000017460

Aliases:None
Description:WD repeat-containing protein 92 [Source:RefSeq peptide;Acc:NP_001248066]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:13:68392529..68528452(-)


>ENSMMUG00000017460
ATGTGCTCACACTTTGATGCGGATGAAATTAAAAGGCTAGGAAAGAGATTTAAGAAGCTTGATTTGGACAATTCTGGTTC
TTTGAGTGTGGAAGAGTTCATGTCTCTGCCTGAGTTACAACAGAATCCTTTAGTACAGCGAGTAATAGATATATTCGACA
CAGATGGGAATGGAGAAGTAGACTTTAAAGAATTCATTGAGGGCGTCTCTCAGTTCAGTGTCAAAGGAGATAAGGAGCAG
AAGTTGAGGTTTGCTTTCCGTATCTATGACATGGATAAAGATGGCTATATTTCCAATGGGGAACTCTTCCAGGTATTGAA
GATGATGGTGGGGAACAATCTGAAAGATACACAGTTACAGCAAATTGTAGACAAAACCATAATAAATGCAGATAAGGATG
GAGATGGAAGAATATCCTTTGAAGAATTCTGTGCTAGGGGTGGGAAGACGGGCCTCTTCGCCGGCCTGGCCTCCTCTGTG
TCCATCCGGCCCGCATCCCCGCCCTCTCCCGCTGCGGACAGCTGTTCAGCCTGTCGTTTCTTCGCCCGCCGGCCACCCTT
ACGGGTGACCTGGGTAAAGCCCTCCTCTGCCCCGGCGCTCTGCGCTTCCATTTCGGATTCCATCCCCCGGAATCTTAAGG
CGCTTCCGGCTGAAACACGTGCCCTGCTGCACCGCGCAGGACCCAGCCTCCGTCAACTAACCCCGCAGCTCCGCCCCTTT
CCTAAAACGTCACAGGCCGGGGACCTGCAGGATTTGGGGCCGGGGGAAAACGGGATTTCGGCTGCAGTGGGTAAAGGCAA
TAAAGAAATTTGTGCTGTTGTGAAGGAACATTCTGTGCGATCGCCAGAGCGCATCTGGCATTATCTAGAGATAACTACAG
CCAACTTCCTAGGGTATCTGGGGCAGAATACGGAAAGCGGGAGGGACAAATTGCCAATGTTTGGAGTCTGGTTTCCAGTG
TTTTGGGGGGCTTCGGGTGTGGCGGTTGTCAGAACTGAAATCGGCTGCACCATGTCGGCCTTCGAGAAGCCTCAGATCAT
CGCCCATATCCAGAAGGGCTTCAACTACACGGTGTTTGACTGTAAATGGGTGCCCTGCAGCGCCAAATTTGTGACCATGG
GCAACTTCGCACGGGGCACCGGCGTCATTCAGCTGTACGAGATCCAGCACGGGGACCTGAAGCTGCTTCGAGAGATTGAA
AAGGCCAAACCTATTAAATGTGGAACATTTGGTGCAACATCTTTACAGCAGAGATATTTAGCTACTGGAGATTTTGGTGG
AAACCTTCATATATGGAATTTAGAAGCTCCAGAGATGCCAGTATATTCTGTAAAGGGCCATAAAGAAATTATAAATGCCA
TAGATGGCGTAGGTGGACTAGGAATTGGAGAAGGAGCACCTGAAATTGTGACTGGCAGCCGAGATGGAACTGTGAAGGTG
TGGGACCCAAGGCAAAAAGATGATCCTGTTGCTAATATGGAACCTGTACAAGGAGAAAACAAGAGAGACTGTTGGACTGT
GGCATTTGGCAATGCTTATAATCAAGAAGAACGTGTTGTTTGTGCTGGTTATGACAATGGGGATATCAAACTATTTGATC
TCAGAAATATGGCATTACGGTGGGAGACAAACATCAAAAATGGGGTATGTAGCTTGGAGTTTGACAGAAAAGACATAAGT
ATGAATAAGTTAGTAGCCACATCTCTGGAAGGAAAGTTCCATGTTTTTGACATGAGAACACAGCATCCAACCAAAGGTTT
TGCCTCTGTTTCAGAAAAGGCTCATAAATCTACTGTGTGGCAGGTCCGACACCTGCCGCAGAACAGGGAGCTCTTTCTGA
CAGCTGGAGGCGCCGGCGGCCTTCACCTCTGGAAGTATGAATACCCTATTCAGCGGTCAAAGAAAGATTCTGAGGGAATA
GAAATGGGAGTCGCAGGTTCTGTAAGCCTTCTGCAGAATGTTACGTTGTCCACCCAGCCCATTTCAAGTTTGGATTGGAG
TCCAGATAAAAGGGGTCTTTGCGTCTGTAGTTCATTTGACCAAACGGTGAGAGTACTAATCGTTACGAAACTCCATAAAA
TTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 70 .68 RPM
SRP007412_brain 140 .40 RPM
SRP007412_cerebellum 81 .95 RPM
SRP007412_heart 12 .72 RPM
SRP007412_kidney 15 .61 RPM
SRP007412_liver 8 .75 RPM
SRP007412_testis 18 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010619 ortholog_one2many 1 retrogene
retro_btau_1660,
Callithrix jacchus ENSCJAG00000006498 ortholog_one2one 1 retrogene
retro_cjac_624,
Dipodomys ordii ENSDORG00000019760 ortholog_one2one 1 retrogene
retro_dord_404,
Equus caballus ENSECAG00000009627 possible_ortholog 1 retrogene
retro_ecab_651,
Felis catus ENSFCAG00000028482 ortholog_one2many 1 retrogene
retro_fcat_1639,
Homo sapiens ENSG00000221823 ortholog_one2many 1 retrogene
retro_hsap_3,
Loxodonta africana ENSLAFG00000022682 ortholog_one2many 1 retrogene
retro_lafr_1014,
Macaca mulatta ENSMMUG00000017092 within_species_paralog 2 retrogenes
retro_mmul_1809, retro_mmul_2088,
Mustela putorius furo ENSMPUG00000006250 ortholog_one2many 1 retrogene
retro_mputfur_537,
Nomascus leucogenys ENSNLEG00000026538 ortholog_one2many 1 retrogene
retro_nleu_1049,
Oryctolagus cuniculus ENSOCUG00000027562 possible_ortholog 1 retrogene
retro_ocun_272,
Otolemur garnettii ENSOGAG00000034876 ortholog_one2many 1 retrogene
retro_ogar_1011,
Pan troglodytes ENSPTRG00000041941 ortholog_one2many 1 retrogene
retro_ptro_2909,
Rattus norvegicus ENSRNOG00000043210 ortholog_one2many 1 retrogene
retro_rnor_1932,
Sus scrofa ENSSSCG00000022362 possible_ortholog 1 retrogene
retro_sscr_86,
Ictidomys tridecemlineatus ENSSTOG00000025985 ortholog_one2many 1 retrogene
retro_itri_1569,
Tarsius syrichta ENSTSYG00000019531 possible_ortholog 2 retrogenes
retro_tsyr_326, retro_tsyr_41,
Tursiops truncatus ENSTTRG00000021395 ortholog_one2many 1 retrogene
retro_ttru_382,
Vicugna pacos ENSVPAG00000015522 possible_ortholog 1 retrogene
retro_vpac_3,
Drosophila melanogaster FBgn0015614 ortholog_one2many 1 retrogene
retro_dmel_53,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1141 81.88 100.00
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Download FASTA sequences of all ENSMMUG00000017460 retrocopies