Parental gene:

Odc1, ENSMUSG00000011179

Aliases:Odc1, ODC
Description:ornithine decarboxylase, structural 1 [Source:MGI Symbol;Acc:MGI:97402]
Organism:Mouse (Mus musculus)
Coordinates:12:17544872..17551502(+)


>ENSMUSG00000011179
ATGAGCAGCTTTACTAAGGACGAGTTTGACTGCCACATCCTTGATGAAGGCTTTACTGCTAAGGACATTCTGGACCAAAA
AATCAATGAAGTCTCTTCCTCTGACGATAAGGATGCGTTCTATGTTGCGGACCTCGGAGACATTCTAAAGAAGCATCTGA
GGTGGCTAAAAGCTCTTCCCCGCGTCACTCCCTTTTACGCAGTCAAGTGTAACGATAGCAGAGCCATAGTGAGCACCCTA
GCTGCCATTGGGACAGGATTTGACTGTGCAAGCAAGACTGAAATACAGTTGGTGCAGGGGCTTGGGGTGCCTGCAGAGAG
GGTTATCTATGCAAATCCTTGTAAACAAGTCTCTCAAATCAAGTATGCTGCCAGTAACGGAGTCCAGATGATGACTTTTG
ACAGTGAAATTGAATTGATGAAAGTCGCCAGAGCACATCCAAAGGCAAAGTTGGTTCTACGGATTGCCACTGATGATTCC
AAAGCTGTCTGTCGCCTCAGTGTTAAGTTTGGTGCCACACTCAAAACCAGCAGGCTTCTCTTGGAACGGGCAAAAGAGCT
AAATATTGACGTCATTGGTGTGAGCTTCCATGTGGGCAGTGGATGTACTGATCCTGAGACCTTCGTTCAGGCAGTGTCGG
ATGCCCGCTGTGTGTTTGACATGGCAACAGAAGTTGGTTTCAGCATGCATCTGCTTGATATTGGTGGTGGCTTTCCTGGA
TCTGAAGATACAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCAACCCAGCTCTGGACAAGTACTTCCCATCAGACTC
TGGAGTGAGAATCATAGCTGAGCCAGGCAGATACTATGTCGCATCAGCTTTCACGCTTGCAGTCAACATCATTGCCAAAA
AAACCGTGTGGAAGGAGCAGCCCGGCTCTGACGATGAAGATGAGTCAAATGAACAAACCTTCATGTATTATGTGAATGAT
GGAGTATATGGATCATTTAACTGCATTCTTTATGATCATGCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCCAGA
CGAGAAGTATTACTCATCCAGCATCTGGGGACCAACATGTGATGGCCTTGATCGGATCGTGGAGCGCTGTAACCTGCCTG
AAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACTGTTGCTGCTGCTTCTACTTTCAATGGGTTC
CAGAGGCCAAACATCTACTATGTAATGTCACGGCCAATGTGGCAACTCATGAAGCAGATCCAGAGCCATGGCTTCCCGCC
GGAGGTGGAGGAGCAGGATGATGGCACGCTGCCCATGTCTTGTGCCCAGGAGAGCGGGATGGACCGTCACCCTGCAGCCT
GTGCTTCTGCTAGGATCAATGTGTAG

Library Parental gene expression (RPM)
SRP007412_brain 36 .54 RPM
SRP007412_cerebellum 43 .94 RPM
SRP007412_heart 40 .72 RPM
SRP007412_kidney 253 .38 RPM
SRP007412_liver 51 .94 RPM
SRP007412_testis 221 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 possible_ortholog 1 retrogene
retro_btau_552,
Dasypus novemcinctus ENSDNOG00000018474 possible_ortholog 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Myotis lucifugus ENSMLUG00000010423 possible_ortholog 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 possible_ortholog 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_one2many 1 retrogene
retro_mdom_262,
Ictidomys tridecemlineatus ENSSTOG00000000386 ortholog_one2one 2 retrogenes
retro_itri_1751, retro_itri_801,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_503 93.20 63.34
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2. retro_mmus_912 88.89 50.33
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3. retro_mmus_984 95.92 84.60
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4. retro_mmus_2588 92.64 100.00
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5. retro_mmus_2744 74.87 81.78
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6. retro_mmus_2745 73.61 81.78
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7. retro_mmus_2746 71.09 80.48
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8. retro_mmus_2747 76.19 54.23
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9. retro_mmus_2834 74.87 80.48
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10. retro_mmus_2922 90.34 93.71
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11. retro_mmus_3237 96.81 67.68
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12. retro_mmus_3677 95.88 63.12
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Download FASTA sequences of all ENSMUSG00000011179 retrocopies