RetrogeneDB ID: | retro_mmus_2744 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:70262632..70263763(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Odc1 | ||
Ensembl ID: | ENSMUSG00000011179 | ||
Aliases: | Odc1, ODC | ||
Description: | ornithine decarboxylase, structural 1 [Source:MGI Symbol;Acc:MGI:97402] |
Percent Identity: | 74.87 % |
Parental protein coverage: | 81.78 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | NEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLV |
.E.........FYVADLGDIL.KHL.WLKALP.VTPFY..K..D.RA.VS.LAAIGTGFDCASKTEIQLV | |
Retrocopy | SEHQITNEVSSFYVADLGDILTKHLKWLKALPLVTPFYTLK*KDNRAMVSSLAAIGTGFDCASKTEIQLV |
Parental | QGLGVPAERVIYA-NPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIA-TDDSKAVCRL |
QGL.VP.ER..YA...CKQVSQIK.AASNG..MMTFDSEIE.MKV.RAH.K.KLVL....TDD.KAV..L | |
Retrocopy | QGLRVPPERITYAWLCCKQVSQIK*AASNGDHMMTFDSEIEFMKVIRAHRKTKLVLWTC>TDDCKAVY*L |
Parental | SVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMATEVGFSMHLLDIGG |
SVK..ATLKTS.LLL.RAKELNIDVIGVSFHV.SG..DPETF.QA.SDA.CVFD..TEVGFSM.LLDIGG | |
Retrocopy | SVKSDATLKTSSLLLKRAKELNIDVIGVSFHVCSGSIDPETFMQAISDAHCVFDIRTEVGFSMYLLDIGG |
Parental | GFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNI--IAKKTVWKEQPGSD |
.F.GSEDTKLKFEEITSVINP.LDKYFPSDSGVRI.AEPGRYY...............KK...KEQ..SD | |
Retrocopy | SFRGSEDTKLKFEEITSVINPTLDKYFPSDSGVRITAEPGRYYAQLSYSQSISLXXXXKKKS*KEQTCSD |
Parental | DEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPE |
DEDE...QTFM.YVN.GVY.SFNCILYDHAHVKALLQKRPK.DEKYY.SSIW.PTCDGLD.IVE.CN.PE | |
Retrocopy | DEDE---QTFMHYVNYGVY*SFNCILYDHAHVKALLQKRPKSDEKYY*SSIWEPTCDGLDPIVEHCNQPE |
Parental | MHVGDWMLFE-NMGAYTVAAASTFNGFQRPNI |
MHVGDWMLFE.NMG.YT.A.ASTF.GFQRP.I | |
Retrocopy | MHVGDWMLFE<NMGEYTIAVASTFIGFQRPDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 36 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .94 RPM |
SRP007412_heart | 0 .00 RPM | 40 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 253 .38 RPM |
SRP007412_liver | 0 .00 RPM | 51 .94 RPM |
SRP007412_testis | 0 .00 RPM | 221 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011415 | 1 retrocopy | |
Bos taurus | ENSBTAG00000004256 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018474 | 31 retrocopies |
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
|
Myotis lucifugus | ENSMLUG00000010423 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020441 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014779 | 1 retrocopy | |
Mus musculus | ENSMUSG00000011179 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000386 | 2 retrocopies |