RetrogeneDB ID: | retro_mmus_2834 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:70368611..70369714(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Odc1 | ||
Ensembl ID: | ENSMUSG00000011179 | ||
Aliases: | Odc1, ODC | ||
Description: | ornithine decarboxylase, structural 1 [Source:MGI Symbol;Acc:MGI:97402] |
Percent Identity: | 74.87 % |
Parental protein coverage: | 80.48 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | DDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVST-LAAIGTGFDCASKTEIQLVQGLGV |
.....FYV.DL.DILKKH.RWLKALP.V.PFYAVKCND.RAIVST.LAAIGTGF.CASKTEIQLVQGL.V | |
Retrocopy | NEVSSFYVVDLRDILKKHMRWLKALPHVIPFYAVKCNDGRAIVST>LAAIGTGFECASKTEIQLVQGLWV |
Parental | PA-ERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGA |
...ER..YA..CKQVSQIKYAASNGVQMMTFDSEIELMKV.RAH.K.KLVL.I.TDDSKAVC.L..K.G. | |
Retrocopy | SE<ERITYAHLCKQVSQIKYAASNGVQMMTFDSEIELMKVLRAHRKTKLVLWIVTDDSKAVC*LGAKSGT |
Parental | TLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSE |
TLKTSR.LL..AKELN.DVIGVSFHV.SGC.DPETF.QAVSDARCVFDM..EVGFSM.LLDIG.GF.GS. | |
Retrocopy | TLKTSRILLKWAKELNTDVIGVSFHVCSGCIDPETFMQAVSDARCVFDMGREVGFSMYLLDIGCGFSGSK |
Parental | DTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPG-SDDEDESNE |
.TKL..EE..SVINPAL.K.FPS.S..RIIAEPGRY......................P..SDDED.... | |
Retrocopy | NTKLNIEEVISVINPALEKFFPSNSVERIIAEPGRYDTQFSHSQSTSLAPTQKGRRSRPA<SDDED---K |
Parental | QTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWM |
QTFM.YVNDGVY.SFN.ILYDHAHVKALLQK.PKPDEKYY.SSIW.PTCDGLD.IVE.CNLPEMHVGDWM | |
Retrocopy | QTFMHYVNDGVY*SFNFILYDHAHVKALLQK*PKPDEKYY*SSIWEPTCDGLDGIVESCNLPEMHVGDWM |
Parental | LFENMGAYTVAAASTFNGFQRPNI |
.FENMG.YT.A.ASTFNGFQRPNI | |
Retrocopy | VFENMGEYTIAVASTFNGFQRPNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 36 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .94 RPM |
SRP007412_heart | 0 .00 RPM | 40 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 253 .38 RPM |
SRP007412_liver | 0 .00 RPM | 51 .94 RPM |
SRP007412_testis | 0 .00 RPM | 221 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011415 | 1 retrocopy | |
Bos taurus | ENSBTAG00000004256 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018474 | 31 retrocopies |
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
|
Myotis lucifugus | ENSMLUG00000010423 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020441 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014779 | 1 retrocopy | |
Mus musculus | ENSMUSG00000011179 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000386 | 2 retrocopies |