Parental gene:

Rps6, ENSMUSG00000028495

Aliases:None
Description:ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:98159]
Organism:Mouse (Mus musculus)
Coordinates:4:86854659..86857412(-)


>ENSMUSG00000028495
ATGAAGCTGAACATCTCCTTCCCCGCCACCGGCTGTCAGAAGCTCATCGAGGTGGATGACGAGCGCAAGCTCCGCACCTT
CTATGAGAAGCGCATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGAGTGGAAGGGTTATGTGGTCCGGATCAGCG
GTGGGAATGACAAGCAAGGTTTTCCCATGAAGCAAGGTGTTCTGACCCATGGCAGAGTGCGCCTGCTGTTGAGTAAGGGG
CATTCCTGTTACAGGCCAAGGAGAACTGGAGAGAGGAAGCGCAAGTCTGTTCGTGGATGCATTGTGGACGCTAATCTCAG
TGTTCTCAACTTGGTCATTGTAAAGAAAGGAGAGAAGGATATTCCTGGACTGACAGACACTACTGTGCCTCGTCGGTTGG
GACCTAAAAGGGCTAGTAGAATCCGCAAGCTTTTTAATCTCTCCAAAGAAGATGATGTCCGCCAGTATGTTGTCAGGAAG
CCCTTAAACAAAGAAGGTAAGAAGCCCAGGACCAAAGCACCCAAGATTCAGCGACTTGTTACTCCTCGTGTCCTGCAACA
CAAACGCCGACGTATTGCTCTGAAGAAGCAACGCACTAAGAAGAACAAGGAGGAGGCTGCAGAATACGCTAAACTTTTGG
CCAAGAGAATGAAGGAAGCCAAAGAAAAGCGCCAGGAACAGATTGCCAAGAGACGTAGGCTGTCCTCACTGAGAGCTTCT
ACTTCTAAGTCTGAGTCCAGTCAAAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 43 .48 RPM
SRP007412_cerebellum 37 .30 RPM
SRP007412_heart 69 .30 RPM
SRP007412_kidney 72 .19 RPM
SRP007412_liver 80 .59 RPM
SRP007412_testis 43 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Canis familiaris ENSCAFG00000001615 ortholog_one2many 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 ortholog_one2many 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2one 1 retrogene
retro_dnov_1192,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Microcebus murinus ENSMICG00000007262 ortholog_one2one 24 retrogenes
retro_mmur_1004, retro_mmur_1024, retro_mmur_1048, retro_mmur_1117, retro_mmur_1169, retro_mmur_1298, retro_mmur_1441, retro_mmur_1530, retro_mmur_189, retro_mmur_406, retro_mmur_414, retro_mmur_473, retro_mmur_517, retro_mmur_560, retro_mmur_723, retro_mmur_748, retro_mmur_760, retro_mmur_783, retro_mmur_794, retro_mmur_811, retro_mmur_856, retro_mmur_88, retro_mmur_907, retro_mmur_911,
Macaca mulatta ENSMMUG00000003412 possible_ortholog 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Ochotona princeps ENSOPRG00000000751 ortholog_one2one 6 retrogenes
retro_opri_1111, retro_opri_1187, retro_opri_248, retro_opri_33, retro_opri_466, retro_opri_865,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pongo abelii ENSPPYG00000019193 ortholog_one2one 15 retrogenes
retro_pabe_1024, retro_pabe_1625, retro_pabe_2065, retro_pabe_2616, retro_pabe_2617, retro_pabe_2882, retro_pabe_2964, retro_pabe_3282, retro_pabe_3481, retro_pabe_3777, retro_pabe_629, retro_pabe_730, retro_pabe_822, retro_pabe_850, retro_pabe_955,
Rattus norvegicus ENSRNOG00000049025 possible_ortholog 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Vicugna pacos ENSVPAG00000006030 ortholog_one2one 10 retrogenes
retro_vpac_217, retro_vpac_228, retro_vpac_288, retro_vpac_297, retro_vpac_392, retro_vpac_407, retro_vpac_412, retro_vpac_438, retro_vpac_618, retro_vpac_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_324 65.61 75.50
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2. retro_mmus_475 60.71 54.62
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3. retro_mmus_477 80.46 68.67
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4. retro_mmus_478 80.92 68.67
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5. retro_mmus_568 89.60 100.00
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6. retro_mmus_588 55.96 74.70
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7. retro_mmus_617 64.67 70.68
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8. retro_mmus_716 89.69 89.16
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9. retro_mmus_743 92.77 94.38
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10. retro_mmus_748 58.49 62.65
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11. retro_mmus_895 69.89 73.09
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12. retro_mmus_938 66.25 62.65
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13. retro_mmus_1010 85.04 100.00
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14. retro_mmus_1126 52.78 57.83
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15. retro_mmus_1291 97.99 100.00
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16. retro_mmus_1357 97.59 100.00
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17. retro_mmus_1436 50.80 73.90
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18. retro_mmus_1590 96.02 100.00
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19. retro_mmus_1663 62.71 70.28
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20. retro_mmus_1701 60.45 51.81
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21. retro_mmus_1720 55.98 72.29
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22. retro_mmus_1966 94.70 53.01
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23. retro_mmus_1969 52.08 56.22
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24. retro_mmus_2047 100.00 100.00
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25. retro_mmus_2068 61.72 50.20
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26. retro_mmus_2146 70.27 58.63
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27. retro_mmus_2167 62.12 79.12
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28. retro_mmus_2171 67.12 57.83
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29. retro_mmus_2336 70.86 60.64
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30. retro_mmus_2342 62.68 55.42
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31. retro_mmus_2367 98.40 100.00
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32. retro_mmus_2369 53.17 50.20
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33. retro_mmus_2489 62.16 58.23
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34. retro_mmus_2546 69.02 100.00
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35. retro_mmus_2593 84.86 100.00
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36. retro_mmus_2601 63.48 68.67
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37. retro_mmus_2625 92.46 100.00
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38. retro_mmus_2824 90.00 100.00
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39. retro_mmus_2845 56.13 97.59
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40. retro_mmus_2946 59.12 60.64
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41. retro_mmus_3154 93.57 100.00
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42. retro_mmus_3256 75.29 69.48
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43. retro_mmus_3338 97.99 100.00
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44. retro_mmus_3498 94.48 65.46
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45. retro_mmus_3633 99.60 100.00
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Download FASTA sequences of all ENSMUSG00000028495 retrocopies