Parental gene:

RPS6, ENSOPRG00000000751

Aliases:None
Description:ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Organism:Southern American pika (Ochotona princeps)
Coordinates:scaffold_23604:4998..8361(-)


>ENSOPRG00000000751
ATGAAGCTGAATATCTCCTTCCCAGCCACTGGCTGCCAAAAGCTCATCGAAGTGGACGATGAGCGTAAACTTCGAACTTT
CTATGAGAAGCGCATGGCAACTGAAGTAGCTGCGGACGCTCTGGGTGAGGAGTGGAAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAGGATTCCCCATGAAGCAAGGTGTCTTGACCGGCCGAGTTCGCCTACTGAGCAAGGGGCACTCC
TGTAGACCCAGGAGAACTGGGGAAAGAAAACGCAAATCAGTGCGGGGCTGCATTGTCGATGCCAACTTGAGTGTTCTCAA
CTTGGTTATAGTAAAAAAAGGAGAGAAAGATATTCCGGGATTGACTGATACTACGGTGCCTCGTCGCCTGGGACCTAAAA
GAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCAAAAGAAGATGACGTGCGCCAGTATGTTGTGAGAAAGCCCCTAAAC
AAGGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACGCCACGAGTCCTCCAGCACAAACGCCG
GCGCATTGCTCTGAAGAAACAGCGGACTAAGAAGATTAAGGAAGAGGCTGCAGAATATGCGAAACTTCTGGCCAAGAGAA
TGAAGGCCAAGAAACGGCAGGAGCAGATCGCCCAGGAGAGCAGGCTGTCTTCCCTGAGAGCATCCCCTTCTTCAGAGTCT
CAAAAATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Canis familiaris ENSCAFG00000001615 ortholog_one2many 4 retrogenes
retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2one 1 retrogene
retro_dnov_1192,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Macaca mulatta ENSMMUG00000003412 possible_ortholog 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Mus musculus ENSMUSG00000028495 ortholog_one2one 45 retrogenes
retro_mmus_1010, retro_mmus_1126, retro_mmus_1291, retro_mmus_1357, retro_mmus_1436, retro_mmus_1590, retro_mmus_1663, retro_mmus_1701, retro_mmus_1720, retro_mmus_1966, retro_mmus_1969, retro_mmus_2047, retro_mmus_2068, retro_mmus_2146, retro_mmus_2167, retro_mmus_2171, retro_mmus_2336, retro_mmus_2342, retro_mmus_2367, retro_mmus_2369, retro_mmus_2489, retro_mmus_2546, retro_mmus_2593, retro_mmus_2601, retro_mmus_2625, retro_mmus_2824, retro_mmus_2845, retro_mmus_2946, retro_mmus_3154, retro_mmus_324, retro_mmus_3256, retro_mmus_3338, retro_mmus_3498, retro_mmus_3633, retro_mmus_475, retro_mmus_477, retro_mmus_478, retro_mmus_568, retro_mmus_588, retro_mmus_617, retro_mmus_716, retro_mmus_743, retro_mmus_748, retro_mmus_895, retro_mmus_938,
Ochotona princeps ENSOPRG00000012290 within_species_paralog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pongo abelii ENSPPYG00000019193 ortholog_one2one 15 retrogenes
retro_pabe_1024, retro_pabe_1625, retro_pabe_2065, retro_pabe_2616, retro_pabe_2617, retro_pabe_2882, retro_pabe_2964, retro_pabe_3282, retro_pabe_3481, retro_pabe_3777, retro_pabe_629, retro_pabe_730, retro_pabe_822, retro_pabe_850, retro_pabe_955,
Rattus norvegicus ENSRNOG00000049025 possible_ortholog 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,
Vicugna pacos ENSVPAG00000006030 ortholog_one2one 10 retrogenes
retro_vpac_217, retro_vpac_228, retro_vpac_288, retro_vpac_297, retro_vpac_392, retro_vpac_407, retro_vpac_412, retro_vpac_438, retro_vpac_618, retro_vpac_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_33 63.64 75.21
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_opri_248 56.08 59.92
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_opri_466 89.31 64.46
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_opri_865 63.64 75.21
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_opri_1111 56.08 59.92
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_opri_1187 62.00 59.92
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSOPRG00000000751 retrocopies