Parental gene:

RPS6, ENSCAFG00000001615

Aliases:None
Description:Canis lupus familiaris ribosomal protein S6 (RPS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001252170]
Organism:Dog (Canis familiaris)
Coordinates:11:39161421..39165148(-)


>ENSCAFG00000001615
ATGAAGCTGAACATCTCTTTCCCAGCTACTGGCTGCCAGAAACTCATTGAAGTGGATGATGAGCGCAAACTGCGTACCTT
TTATGAGAAGCGTATGGCCACAGAAGTTGCTGCCGATGCTCTGGGCGAGGAATGGAAGGGTTACGTGGTGCGAATCAGTG
GTGGCAATGACAAACAAGGCTTCCCCATGAAGCAGGGTGTCTTGACCCACGGCCGCGTCCGCCTGCTGCTGAGTAAGGGG
CATTCCTGCTACCGACCCAGGAGGACTGGAGAGAGGAAGCGCAAATCTGTTCGGGGTTGCATTGTGGATGCCAATCTCAG
TGTTCTCAATTTGGTTATTGTGAAAAAAGGGGAGAAGGATATTCCTGGACTCACGGATACTACTGTGCCTCGTCGCCTGG
GGCCCAAAAGAGCCAGCAGAATCCGAAAGCTTTTTAATCTGTCGAAAGAAGACGATGTCCGCCAGTATGTTGTTAGAAAG
CCCCTAAACAAAGAAGGTAAGAAACCTAGAACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTCCAACA
CAAACGTCGGCGTATTGCTTTGAAGAAACAGCGTACTAAGAAAAATAAGGAAGAGGCTGCAGAATATGCTAAACTTTTGG
CCAAGAGAATGAAGGAGGCCAAAGAAAAACGCCAGGAACAGATTGCCAAGAGACGGAGGCTGTCCTCTCTGAGAGCTTCT
ACCTCTAAGTCTGAGTCCAGTCAAAAATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 286 .05 RPM
SRP017611_brain 91 .38 RPM
SRP017611_kidney 806 .51 RPM
SRP017611_liver 181 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
retro_acar_20,
Ailuropoda melanoleuca ENSAMEG00000002925 possible_ortholog 14 retrogenes
retro_amel_1040, retro_amel_1250, retro_amel_1384, retro_amel_1526, retro_amel_1646, retro_amel_1676, retro_amel_189, retro_amel_312, retro_amel_334, retro_amel_382, retro_amel_510, retro_amel_568, retro_amel_657, retro_amel_841,
Callithrix jacchus ENSCJAG00000020612 ortholog_many2many 6 retrogenes
retro_cjac_1246, retro_cjac_18, retro_cjac_180, retro_cjac_190, retro_cjac_2982, retro_cjac_59,
Cavia porcellus ENSCPOG00000003750 possible_ortholog 4 retrogenes
retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus ENSDNOG00000007241 ortholog_one2many 1 retrogene
retro_dnov_1192,
Equus caballus ENSECAG00000016190 possible_ortholog 5 retrogenes
retro_ecab_175, retro_ecab_312, retro_ecab_603, retro_ecab_771, retro_ecab_861,
Ficedula albicollis ENSFALG00000003078 possible_ortholog 1 retrogene
retro_falb_24,
Felis catus ENSFCAG00000002541 possible_ortholog 26 retrogenes
retro_fcat_1082, retro_fcat_1108, retro_fcat_1154, retro_fcat_1262, retro_fcat_1373, retro_fcat_1642, retro_fcat_1679, retro_fcat_1760, retro_fcat_1791, retro_fcat_1934, retro_fcat_1937, retro_fcat_1963, retro_fcat_198, retro_fcat_238, retro_fcat_328, retro_fcat_358, retro_fcat_380, retro_fcat_392, retro_fcat_493, retro_fcat_659, retro_fcat_738, retro_fcat_750, retro_fcat_850, retro_fcat_894, retro_fcat_912, retro_fcat_968,
Gorilla gorilla ENSGGOG00000002652 possible_ortholog 13 retrogenes
retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana ENSLAFG00000010766 possible_ortholog 4 retrogenes
retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Microcebus murinus ENSMICG00000007262 ortholog_one2many 24 retrogenes
retro_mmur_1004, retro_mmur_1024, retro_mmur_1048, retro_mmur_1117, retro_mmur_1169, retro_mmur_1298, retro_mmur_1441, retro_mmur_1530, retro_mmur_189, retro_mmur_406, retro_mmur_414, retro_mmur_473, retro_mmur_517, retro_mmur_560, retro_mmur_723, retro_mmur_748, retro_mmur_760, retro_mmur_783, retro_mmur_794, retro_mmur_811, retro_mmur_856, retro_mmur_88, retro_mmur_907, retro_mmur_911,
Macaca mulatta ENSMMUG00000003412 possible_ortholog 1 retrogene
retro_mmul_263,
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
retro_mdom_301,
Mus musculus ENSMUSG00000028495 ortholog_one2many 45 retrogenes
retro_mmus_1010, retro_mmus_1126, retro_mmus_1291, retro_mmus_1357, retro_mmus_1436, retro_mmus_1590, retro_mmus_1663, retro_mmus_1701, retro_mmus_1720, retro_mmus_1966, retro_mmus_1969, retro_mmus_2047, retro_mmus_2068, retro_mmus_2146, retro_mmus_2167, retro_mmus_2171, retro_mmus_2336, retro_mmus_2342, retro_mmus_2367, retro_mmus_2369, retro_mmus_2489, retro_mmus_2546, retro_mmus_2593, retro_mmus_2601, retro_mmus_2625, retro_mmus_2824, retro_mmus_2845, retro_mmus_2946, retro_mmus_3154, retro_mmus_324, retro_mmus_3256, retro_mmus_3338, retro_mmus_3498, retro_mmus_3633, retro_mmus_475, retro_mmus_477, retro_mmus_478, retro_mmus_568, retro_mmus_588, retro_mmus_617, retro_mmus_716, retro_mmus_743, retro_mmus_748, retro_mmus_895, retro_mmus_938,
Ochotona princeps ENSOPRG00000000751 ortholog_one2many 6 retrogenes
retro_opri_1111, retro_opri_1187, retro_opri_248, retro_opri_33, retro_opri_466, retro_opri_865,
Ochotona princeps ENSOPRG00000012290 possible_ortholog 5 retrogenes
retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pongo abelii ENSPPYG00000019193 ortholog_one2many 15 retrogenes
retro_pabe_1024, retro_pabe_1625, retro_pabe_2065, retro_pabe_2616, retro_pabe_2617, retro_pabe_2882, retro_pabe_2964, retro_pabe_3282, retro_pabe_3481, retro_pabe_3777, retro_pabe_629, retro_pabe_730, retro_pabe_822, retro_pabe_850, retro_pabe_955,
Rattus norvegicus ENSRNOG00000049025 possible_ortholog 8 retrogenes
retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
retro_shar_549,
Sus scrofa ENSSSCG00000005169 possible_ortholog 6 retrogenes
retro_sscr_187, retro_sscr_425, retro_sscr_645, retro_sscr_856, retro_sscr_940, retro_sscr_983,
Vicugna pacos ENSVPAG00000006030 ortholog_one2many 10 retrogenes
retro_vpac_217, retro_vpac_228, retro_vpac_288, retro_vpac_297, retro_vpac_392, retro_vpac_407, retro_vpac_412, retro_vpac_438, retro_vpac_618, retro_vpac_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_48 98.80 100.00
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2. retro_cfam_87 93.17 100.00
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3. retro_cfam_184 93.57 100.00
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4. retro_cfam_1936 67.00 78.71
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Download FASTA sequences of all ENSCAFG00000001615 retrocopies