RetrogeneDB ID: | retro_cfam_87 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:44049684..44050434(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008109 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSCAFG00000001615 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S6 (RPS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001252170] |
Percent Identity: | 93.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTH |
MKLNISFPATGCQKLIEV.DERKL.TFYEK.MATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTH | |
Retrocopy | MKLNISFPATGCQKLIEVGDERKLHTFYEKHMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTH |
Parental | GRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASR |
..VRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVL.LVIVKKGEK.IPGL..TTVPRR.GPKRASR | |
Retrocopy | VHVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLHLVIVKKGEKHIPGLIVTTVPRRPGPKRASR |
Parental | IRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYA |
IRKLFNLSKEDDV.QYVVRKPLNKEGKKPRTKAP.IQRLVTPRVLQHKRRRIAL.KQRTK.NKEEAA..A | |
Retrocopy | IRKLFNLSKEDDVCQYVVRKPLNKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALRKQRTKENKEEAADFA |
Parental | KLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
KLLAKRMKEAKEKRQEQIAKR.RLSSLRASTSKSESSQK | |
Retrocopy | KLLAKRMKEAKEKRQEQIAKRWRLSSLRASTSKSESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 286 .05 RPM |
SRP017611_brain | 0 .00 RPM | 91 .38 RPM |
SRP017611_kidney | 0 .73 RPM | 806 .51 RPM |
SRP017611_liver | 0 .36 RPM | 181 .50 RPM |