RetrogeneDB ID: | retro_mmus_477 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:107138058..107138569(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083884 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps6 | ||
Ensembl ID: | ENSMUSG00000028495 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:98159] |
Percent Identity: | 80.46 % |
Parental protein coverage: | 68.67 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVV-RISGGNDKQ-GFPMKQGVL |
MKLNISFP.TGCQKLIEVDD..KLRTFYEK.MATEVAADALGE..KGYV....SGGN..Q..FPMKQG.L | |
Retrocopy | MKLNISFPGTGCQKLIEVDDQHKLRTFYEKCMATEVAADALGED*KGYVAGSASGGNERQ<SFPMKQGIL |
Parental | THGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNL-VIVKKGEKDIPGLTDTTVPRRLGPKR |
TH.RV.LLLSK.HSCYRPRRTG.RK.KSV.GCIVD.NLSVLNL.VIVKKG.K.IPGLTDTTVP..LGPKR | |
Retrocopy | THSRVNLLLSKRHSCYRPRRTGDRKFKSV*GCIVDGNLSVLNL<VIVKKGKKHIPGLTDTTVPHPLGPKR |
Parental | ASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRT |
ASR..KLFNLSK.DDV.QYVVRKP.NK..KKPRT | |
Retrocopy | ASRM*KLFNLSK-DDVCQYVVRKP*NKDCKKPRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 37 .30 RPM |
SRP007412_heart | 0 .00 RPM | 69 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 72 .19 RPM |
SRP007412_liver | 0 .00 RPM | 80 .59 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_68127 | 689 libraries | 360 libraries | 23 libraries | 0 libraries | 0 libraries |