RetrogeneDB ID: | retro_pabe_2882 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:78158808..78159275(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000019193 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.62 % |
Parental protein coverage: | 63.05 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTH |
MKLNI.FPATGCQK.I..D.E.KL..F..K.MAT...ADALGEE.KGYVV.ISGGN.K..FPMKQG.LTH | |
Retrocopy | MKLNIFFPATGCQKFI--DYEHKLLGFS*KHMATDITADALGEE*KGYVVHISGGNHK*DFPMKQGILTH |
Parental | GRVRLLLSKG-HSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV--KKGEKDIPGLTDTTVPRRLGPKR |
G...L.L..G..SC.RP.RT.ERK.KSV.GCI.DANLS.LN...V.......D.PGLTDT.VP..L.PKR | |
Retrocopy | GYICL*L-RG<YSCFRPKRTEERKCKSV*GCIMDANLSILNIIFVXXXXXXXDTPGLTDTMVPHCLRPKR |
Parental | ASRIRKLFNLSKEDDVRQYV |
ASR..KLFNLS..DDV.QYV | |
Retrocopy | ASRVCKLFNLSEKDDVCQYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 186 .66 RPM |
SRP007412_cerebellum | 0 .00 RPM | 221 .44 RPM |
SRP007412_heart | 0 .00 RPM | 280 .38 RPM |
SRP007412_kidney | 0 .00 RPM | 563 .50 RPM |
SRP007412_liver | 0 .00 RPM | 437 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2358 |