Parental gene:

ACTG1, ENSNLEG00000013385

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397368.1:347004..350749(-)


>ENSNLEG00000013385
ATGGTCGCAATGGAAGAAGAAATCGCCGCGCTCGTCATTGACAATGGTTCTGGTATGTGCAAAGCTGGTTTTGCTGGGGA
CGACGCTCCCCGAGCCGTGTTTCCCTCCATCGTCGGGCGCCCCCGACACCAGGGCGTGATGGTGGGCATGGGCCAGAAGG
ACTCCTACGTGGGCGACGAGGCCCAGAGCAAGCGCGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGTATCGTCACC
AACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCGGAGGAGCACCCAGTGCT
GTTGACCGAGGCCCCCCTGAACCCCAAGGCCAACAGAGAGAAGATGACTCAGATTATGTTTGAGACCTTCAACACCCCGG
CCATGTATGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCTGGGCGCACCACTGGCATTGTCATGGACTCTGGAGAC
GGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGA
CCTGACCGACTACCTCATGAAGATCCTCACCGAGCGAGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGCG
ACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTTGAGCAGGAGATGGCCACCGCCGCATCCTCCTCTTCGCTGGAG
AAGAGCTATGAGCTGCCCGATGGCCAGGTTATCACCATCGGCAATGAGCGGTTCCGGTGTCCGGAGGCGCTGTTCCAGCC
TTCTTTCCTGGGCATGGAATCTTGCGGCATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCA
AAGACCTGTACGCCAACACGGTGTTGTCCGGCGGCACCACCATGTACCCAGGTATTGCCGACAGGATGCAGAAGGAGATC
ACCGCTCTGGCACCCAGCACCATGAAGATCAAGATCATCGCACCCCCAGAGCGCAAGTACTCGGTGTGGATCGGCGGCTC
CATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGACGAGTCAGGCCCTTCCATCGTCC
ATCGCAAATGCTTCTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015238 ortholog_one2one 3 retrogenes
retro_acar_176, retro_acar_199, retro_acar_7,
Bos taurus ENSBTAG00000006189 ortholog_one2one 2 retrogenes
retro_btau_286, retro_btau_903,
Callithrix jacchus ENSCJAG00000002885 possible_ortholog 3 retrogenes
retro_cjac_139, retro_cjac_336, retro_cjac_377,
Gallus gallus ENSGALG00000028749 ortholog_one2one 1 retrogene
retro_ggal_6,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Macropus eugenii ENSMEUG00000016247 ortholog_one2one 57 retrogenes
retro_meug_1006, retro_meug_1010, retro_meug_1018, retro_meug_1042, retro_meug_105, retro_meug_1085, retro_meug_1147, retro_meug_1186, retro_meug_1200, retro_meug_1230, retro_meug_1237, retro_meug_1380, retro_meug_1414, retro_meug_1437, retro_meug_1529, retro_meug_1534, retro_meug_1557, retro_meug_1588, retro_meug_1613, retro_meug_1624, retro_meug_1654, retro_meug_1656, retro_meug_1664, retro_meug_1669, retro_meug_1708, retro_meug_1716, retro_meug_1723, retro_meug_1753, retro_meug_1763, retro_meug_18, retro_meug_1935, retro_meug_1969, retro_meug_197, retro_meug_1982, retro_meug_1991, retro_meug_2100, retro_meug_2176, retro_meug_218, retro_meug_270, retro_meug_333, retro_meug_370, retro_meug_379, retro_meug_468, retro_meug_506, retro_meug_556, retro_meug_574, retro_meug_581, retro_meug_61, retro_meug_735, retro_meug_790, retro_meug_833, retro_meug_90, retro_meug_900, retro_meug_915, retro_meug_924, retro_meug_925, retro_meug_959,
Microcebus murinus ENSMICG00000014863 ortholog_one2one 3 retrogenes
retro_mmur_23, retro_mmur_352, retro_mmur_6,
Nomascus leucogenys ENSNLEG00000012233 within_species_paralog 1 retrogene
retro_nleu_2313,
Nomascus leucogenys ENSNLEG00000014347 other_paralog 1 retrogene
retro_nleu_1585,
Nomascus leucogenys ENSNLEG00000015157 other_paralog 1 retrogene
retro_nleu_2751,
Nomascus leucogenys ENSNLEG00000015506 within_species_paralog 3 retrogenes
retro_nleu_1525, retro_nleu_1536, retro_nleu_1930,
Oryctolagus cuniculus ENSOCUG00000005867 possible_ortholog 1 retrogene
retro_ocun_720,
Otolemur garnettii ENSOGAG00000008040 ortholog_one2one 3 retrogenes
retro_ogar_148, retro_ogar_1808, retro_ogar_2430,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pelodiscus sinensis ENSPSIG00000002102 ortholog_one2one 2 retrogenes
retro_psin_25, retro_psin_4,
Rattus norvegicus ENSRNOG00000036701 possible_ortholog 1 retrogene
retro_rnor_715,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_344 83.46 99.74
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2. retro_nleu_813 82.18 91.47
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3. retro_nleu_974 76.63 89.07
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4. retro_nleu_1008 80.00 86.93
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5. retro_nleu_1058 82.89 98.68
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6. retro_nleu_1059 82.37 77.78
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7. retro_nleu_1150 88.86 99.21
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8. retro_nleu_1347 77.04 98.94
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9. retro_nleu_1474 80.21 99.74
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10. retro_nleu_1729 78.68 99.74
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11. retro_nleu_2193 80.17 61.64
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12. retro_nleu_2393 72.11 65.87
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13. retro_nleu_2574 84.84 72.49
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14. retro_nleu_2669 84.00 52.12
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15. retro_nleu_3032 78.38 67.46
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Download FASTA sequences of all ENSNLEG00000013385 retrocopies