RetrogeneDB ID: | retro_meug_556 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold136066:5230..6017(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSMEUG00000016247 | ||
Aliases: | None | ||
Description: | actin, gamma 1 [Source:HGNC Symbol;Acc:144] |
Percent Identity: | 82.13 % |
Parental protein coverage: | 69.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
M...IAALV..N.SGMCKAGFAGD.AP...F.SIVG.PRHQGVMVGMGQKDSYVGDE.QSKRGILTLKYP | |
Retrocopy | MDDDIAALVVGNSSGMCKAGFAGDKAPWVDFFSIVGHPRHQGVMVGMGQKDSYVGDEDQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
IEHGIVTNWDD.EKIWHHTFYNEL.VAPEEHPVLLTEAPLNPKA..EKMTQIMFETFNTPAMY..IQAVL | |
Retrocopy | IEHGIVTNWDDKEKIWHHTFYNELHVAPEEHPVLLTEAPLNPKAKKEKMTQIMFETFNTPAMYFTIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDL-TDYLMKILTERGYSFTTTAEREIV |
.LYASGRTTGIV.DSGDGVTHTV.IYE.YALPHA.L.LDLA..DL..D..MKIL.E.GYSF.TT..R.I. | |
Retrocopy | LLYASGRTTGIVTDSGDGVTHTVHIYEDYALPHANLHLDLAVCDL>KDHHMKILAEGGYSFATTSGRDIL |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALF |
RDIK.KLCY.ALDFEQEMATA.SS.SLEKSY.LPDGQVITI.N..F.CPEALF | |
Retrocopy | RDIKQKLCYIALDFEQEMATAPSSTSLEKSYKLPDGQVITISNKSFQCPEALF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |