RetrogeneDB ID:

retro_meug_1437

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold404414:872..1973(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACTG1
Ensembl ID:ENSMEUG00000016247
Aliases:None
Description:actin, gamma 1 [Source:HGNC Symbol;Acc:144]


Retrocopy-Parental alignment summary:






>retro_meug_1437
GTGGTAGACAACGGATCCGGCATGTGCAAGGCTGGCTTTGCCGGAGATGACGCCCCTCGGGCTGTGTTTCCTTCCATCGT
GGGTCGCCCCAGGCACCAAGGGGTCATGGTCGGCATGGGGCAGAAGGATAGCTATGTGGGTGATGAGGCCCAGAGCAAAA
GGGGCATCCTTACCCTGAAGTATCCAATTGAGCATGGCATTGTCACCAACTGGGATGACATGGAAAAAATCTGGCACCAC
ACTTTCTACAACGAGCTCAGAGTCGCCCCAGAGGAGCACCCGGTTCTGCTCACCGAAGCTCCTCTGAACCCAAAGGCCAA
TAGAGAGAAGATGACACAAATCATGTTCGAGACCTTCAACACTCCAGCAATGTATGTGGCCATCCAGGCAGTGCTGTCTC
TCTATGCTTCTGGTCGTACCACGGGTATCGTGATGGACTCTGGGGATGGGGTCACCCATACTGTCCCTATCTATGAAGGC
TATGCTCTCCCACATGCTATCCTGCGTCTAGACCTGGCTGGTCGGGACCTCACCGACTACCTCATGAAGATTTTGACTGA
AAGAGGCTACAGCTTCACCACAACAGCTGAGAGGGAGATTGTGAGGGATGTCAAAGAGAAGCTGTGTTATGTTGCCCTGG
ACTTCGAGCAAGAAATGGCTACTGCGGCTTCTTCCTCCTCCCTAGAGAAGAGCTATGAGCTACCTGATGGTCAAGTCATT
ACCATTGGCAACGAGAGATTCCGATGCCCAGAATCAATCTTCCAGCCTTCTTTCCTGGGAATGGAGTCCTGTGGAATTCA
TGAGACCACCTACAATTCCATCATGAAGTGTGATGTTGACATCCGAAAGGATCTATATGCTAATACAGTGTTATCCGGTG
GTACCACTATGTATCCTGGCATTGCTGACAGAATGCAGAAGGAGATCACAGCCCTGGCTCCAAGCACCATGAAAATCAAA
ATCATTGCCCCACCCGAAAGAAAATACTCTGTCTGGATTGGAGGCTCCATTTTGGCTTCTCTCTCTACTTTCCAGCAGAT
GTGGATAAGCAAGCAAGAATATGATGAGTCTGGTCCTTCTATTGTCCACCGCAAATGCTTT

ORF - retro_meug_1437 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.64 %
Parental protein coverage: 97.87 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN
V.DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN
RetrocopyVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN
ParentalWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT
WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT
RetrocopyWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT
ParentalTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY
TGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD.KEKLCY
RetrocopyTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDVKEKLCY
ParentalVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVD
VALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPE..FQPSFLGMESCGIHETT.NSIMKCDVD
RetrocopyVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESIFQPSFLGMESCGIHETTYNSIMKCDVD
ParentalIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS
IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS
RetrocopyIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS
ParentalKQEYDESGPSIVHRKCF
KQEYDESGPSIVHRKCF
RetrocopyKQEYDESGPSIVHRKCF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1437 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1437 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 103 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000152383 retrocopies
Bos taurus ENSBTAG000000061892 retrocopies
Callithrix jacchus ENSCJAG000000028853 retrocopies
Gallus gallus ENSGALG000000287491 retrocopy
Loxodonta africana ENSLAFG000000091671 retrocopy
Macropus eugenii ENSMEUG000000054631 retrocopy
Macropus eugenii ENSMEUG000000108431 retrocopy
Macropus eugenii ENSMEUG00000016247 57 retrocopies
Microcebus murinus ENSMICG000000148633 retrocopies
Nomascus leucogenys ENSNLEG0000001338515 retrocopies
Nomascus leucogenys ENSNLEG000000155063 retrocopies
Oryctolagus cuniculus ENSOCUG000000058671 retrocopy
Otolemur garnettii ENSOGAG000000080403 retrocopies
Petromyzon marinus ENSPMAG000000041611 retrocopy
Pelodiscus sinensis ENSPSIG000000021022 retrocopies
Rattus norvegicus ENSRNOG000000367011 retrocopy
Sorex araneus ENSSARG000000121971 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000068682 retrocopies
Tupaia belangeri ENSTBEG000000107811 retrocopy
Xenopus tropicalis ENSXETG000000251161 retrocopy



Copyright © RetrogeneDB 2014-2017