RetrogeneDB ID: | retro_ocun_246 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:16561147..16562284(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023018 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSOCUG00000015939 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A (LDHA), mRNA [Source:RefSeq mRNA;Acc:NM_001082277] |
Percent Identity: | 73.18 % |
Parental protein coverage: | 95.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FHAKIPFGSRSKMAALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKL |
F.A..PF...SKMA..K..L..N...EE.V..NK....G.G.VGMACA.SIL.K.L.DELALVDV.E.KL | |
Retrocopy | FTAVWPFTPVSKMATVKRELMQNFTSEEPVCHNKVSIIGAGSVGMACAVSILLKGLSDELALVDVDERKL |
Parental | KGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS |
KGE.MDLQHGSLF...P.IV..KDY.VTANS.LVIITAGARQ..GE.RLNLVQRNV.IFKF.I.N.V.YS | |
Retrocopy | KGETMDLQHGSLFMKMPNIVCSKDYLVTANSSLVIITAGARQEQGETRLNLVQRNVTIFKFMISNIVQYS |
Parental | PHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSV |
P.CKL.VVSNPVDILTYVAWK.S.FPKNRVIGSGCNLD.ARFR.L.G..LG.H..SCHGW.LGEHGDSSV | |
Retrocopy | PSCKLIVVSNPVDILTYVAWKLSAFPKNRVIGSGCNLDTARFRFLIGQKLGIHSESCHGWVLGEHGDSSV |
Parental | PVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLR |
PVWSG.NVAGV.LK.L..E.GTD.D.EQWK.VH..V..SAYE.IK.KGYTSWAIGLSVADL.ESI.KNLR | |
Retrocopy | PVWSGVNVAGVPLKDLNAEIGTDRDPEQWKNVHREVIASAYEIIKMKGYTSWAIGLSVADLTESILKNLR |
Parental | RVHPISTMIKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQ |
R.HP.ST.I.GLYGI.E.VFLSVPCVLG.NGISD.VK..LT..EEAHLKKSA.TLW.IQKEL. | |
Retrocopy | RMHPVSTIIQGLYGIDEEVFLSVPCVLGENGISDLVKIKLTPGEEAHLKKSAETLWAIQKELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 108 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .12 RPM |
SRP017611_liver | 0 .00 RPM | 113 .15 RPM |