Parental gene: | BTF3, ENSOCUG00000024914 |
| Aliases: | None |
| Description: | basic transcription factor 3 [Source:HGNC Symbol;Acc:1125] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | GL018720:2075600..2082988(+) |
>ENSOCUG00000024914
GGCTCCCCTGGGGCGAGGGGACGCCGTCTCTTCCTTCCACCTCCGGGCGGAACCCGAGGACAGGAGCTCAGGATGAAAGA
AACTATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCGCAGAAAGA
AGAAGGTGGTTCACAGAACAGCAACAGCAGATGATAAAAAACTTCAGTTCTCCCTAAAGAAATTAGGGGTAAACAATATC
TCTGGTATTGAAGAGGTGAATATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAGGCTTCTCT
GGCAGCAAACACCTTCACCATTACAGGCCACGCTGAGACAAAGCAGCTGACAGAAATGCTCCCCAGCATCTTGAACCAGC
TTGGCGCAGACAGCCTGACTAGCTTGAGGAGGCTGGCCGAAGCGCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTT
GCTACTGGAGAGGACGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAGGCAAACTG
A
GGCTCCCCTGGGGCGAGGGGACGCCGTCTCTTCCTTCCACCTCCGGGCGGAACCCGAGGACAGGAGCTCAGGATGAAAGA
AACTATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCGCAGAAAGA
AGAAGGTGGTTCACAGAACAGCAACAGCAGATGATAAAAAACTTCAGTTCTCCCTAAAGAAATTAGGGGTAAACAATATC
TCTGGTATTGAAGAGGTGAATATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAGGCTTCTCT
GGCAGCAAACACCTTCACCATTACAGGCCACGCTGAGACAAAGCAGCTGACAGAAATGCTCCCCAGCATCTTGAACCAGC
TTGGCGCAGACAGCCTGACTAGCTTGAGGAGGCTGGCCGAAGCGCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTT
GCTACTGGAGAGGACGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAGGCAAACTG
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 61 .27 RPM |
| SRP017611_kidney | 177 .17 RPM |
| SRP017611_brain | 100 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016600 | possible_ortholog | 4 retrogenes | |
| Ciona savignyi | ENSCSAVG00000009653 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000017341 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000166 | ortholog_one2one | 10 retrogenes | |
| Monodelphis domestica | ENSMODG00000001762 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000001517 | within_species_paralog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000029576 | ortholog_one2one | 14 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016912 | ortholog_one2many | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_446 | 65.93 | 81.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_857 | 73.39 | 75.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_916 | 70.00 | 58.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1186 | 84.06 | 73.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1299 | 58.00 | 52.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1364 | 75.97 | 69.35 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000024914 retrocopies