RetrogeneDB ID:

retro_etel_1216

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_230020:459..983(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000017341
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1216
CCTAGTCCCCCGCGCGGCCCCATTTCCGCTCCGACAAGATGAAAGAGACGATCATGAATCAAGAGAAACTCGCCAAACTG
CAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCCCGCAGAAAGAAGAAGGTGGTTCACAGAACAGCCACAGCAGATGA
CAAAAAACTGCAGTTCTCCTTAAAGAAGCTAGGGGTAAACAATATCTCTGGTATTGAAGAGGTGAATATGTTTACAAACC
AGGGAACAGTGATCCACTTTAACAATCCTAAAGTCCAAGCATCACTGGCTGCGAACACCTTCACCATCACCGGCCATGCT
GAGACAAAGCAGCTGACAGAGATGCTCCCCAGCATCTTGAACCAGCTGGGCGCAGACAGCCTGACTAGCCTAAGGAGACT
GGCTGAAGCACTGCCAAAACAATCTGTGGATGGAAAGGCCCCACTTGCTACAGGAGAAGATGATGATGATGAGGTTCCAG
ATCTTGTGGAGAACTTTGATGAGGCATCCAAGAATGAGGCTAAC

ORF - retro_etel_1216 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.79 %
Parental protein coverage: 85.02 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPPPRGGPRAL-EPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNI
P.P..GP.......MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNI
RetrocopyPSPPRGPISA<SDKMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNI
ParentalSGIEEVVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL
SGIEE.VNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL
RetrocopySGIEE-VNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL
ParentalPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
PKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
RetrocopyPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1216 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 81 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000100125 retrocopies
Callithrix jacchus ENSCJAG000000166004 retrocopies
Ciona savignyi ENSCSAVG000000096531 retrocopy
Equus caballus ENSECAG000000216291 retrocopy
Echinops telfairi ENSETEG0000001192311 retrocopies
Echinops telfairi ENSETEG00000017341 5 retrocopies
Gorilla gorilla ENSGGOG0000000016610 retrocopies
Microcebus murinus ENSMICG000000171823 retrocopies
Monodelphis domestica ENSMODG000000017623 retrocopies
Nomascus leucogenys ENSNLEG000000047189 retrocopies
Oryctolagus cuniculus ENSOCUG000000249146 retrocopies
Pongo abelii ENSPPYG0000002957614 retrocopies
Rattus norvegicus ENSRNOG000000169129 retrocopies



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