RetrogeneDB ID: | retro_ocun_1912 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:5129924..5130281(-) | ||
Located in intron of: | ENSOCUG00000014758 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000001517 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.24 % |
Parental protein coverage: | 75.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADS |
QS.LK.LAVN...G.EEV.MIKDDGTV.HFNNPKVQASLSANTF.ITGHAEAKP.TEMLPGILSQLGADS | |
Retrocopy | QSALKTLAVNTVPGVEEVAMIKDDGTVTHFNNPKVQASLSANTFTITGHAEAKPVTEMLPGILSQLGADS |
Parental | LTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN |
LTSLRK.AEQFPRQVLD.KAPKPED.DEEDDDVPDLV.NFDEASKNEAN | |
Retrocopy | LTSLRKSAEQFPRQVLDGKAPKPEDRDEEDDDVPDLVANFDEASKNEAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .82 RPM |
SRP017611_liver | 0 .00 RPM | 4 .32 RPM |