RetrogeneDB ID: | retro_ocun_1001 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 19:16294327..16294794(+) | ||
Located in intron of: | ENSOCUG00000025200 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000001517 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEE-VNMIKDDGTVIHF |
MNQE.LAKLQAQV..GGKGTA.R.K.V.........K.....L......NIAG.EE.V..IKDDGTVIHF | |
Retrocopy | MNQEQLAKLQAQVQRGGKGTAHREKVVNSEQLQLSTKSFRV-LSENWLKNIAGSEE<VSVIKDDGTVIHF |
Parental | NNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEED |
NNPKVQA.LSANT....GHAE.KPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEED | |
Retrocopy | NNPKVQACLSANT-SNSGHAEVKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEED |
Parental | DDVPDLVENFDEASKNEAN |
DDV..LVEN.DEASKNEAN | |
Retrocopy | DDVSGLVENCDEASKNEAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 21 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .82 RPM |
SRP017611_liver | 0 .00 RPM | 4 .32 RPM |