Parental gene: | SH3GL1, ENSPPYG00000009405 |
| Aliases: | None |
| Description: | SH3-domain GRB2-like 1 [Source:HGNC Symbol;Acc:10830] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 19:4334909..4341681(-) |
>ENSPPYG00000009405
CTGGTCAGTGAGAAGGTCGGAGGGGCCGAGGGGACCAAGCTGGATGATGACTTCAAAGAGATGGAGAAGAAGGTGGATGT
CACCAGCAAGGCGGTGGCAGAAGTGCTGGCCAGGACCATCGAGTACCTGCAGCCCAACCCAGGCGACGCATTGCTGGATG
CCGGCGAGTCCATGAAGCGCCTGGCAGAGGTGAAGGACTCCCTGGACATAGAGGTCAAGCAGAACTTCATTGACCCCCTC
CAGAACCTATGCGAGAAAGACCTGAAGGAGATCCAGCACCACCTGAAGAAACTGGAGGGCCGCCGCCTGGACTTTGACTA
CAAGAAGAAGCGGCAGGGCAAGATCCCCGATGAGGAGCTACGCCAGGCGCTGGAGAAGTTCGAGGAGTCCAAGGAGGTGG
CAGAAACCAGCATGCACAACCTCCTGGAGACCGACATCGAGCAGGTGAGTCAGCTCTCGGCCCTGGTAGACGCACAGCTG
GACTACCACCGGCAGGCCGTGCAGATCCTGGACGAGCTGGCCGAGAAGCTCAAGCGCAGGATGCGGGAAGCTTCCTCACG
CCCTAAGCGGGAGTATAAGCCCAAGCCCCGGGAGCCCTTTGACCTTGGAGAGCCTGAGCAGTCCAACGGGGGCTTCCCCT
GCACCACAGCCCCCAAGATTGCAGCTTCATCATCTTTCCGATCTTCCGACAAGCCCATCCGGACCCCTAGCCGGAGCATG
CCACCCCTGGACCAGCCGAGCTGCAAGGCGCTGTATGACTTCGAGCCCGAGAACGACGGGGAGCTGGGCTTCCGTGAGGG
CGACGTCATCACGCTGACGAACCAGATCGACGAGAACTGGTACGAGGGCATGCTGGACGGCCAGTCAGGCTTCTTCCCGC
TCAGCTACGTGGAGGTGCTTGTGCCCCTGCCGCAGTGA
CTGGTCAGTGAGAAGGTCGGAGGGGCCGAGGGGACCAAGCTGGATGATGACTTCAAAGAGATGGAGAAGAAGGTGGATGT
CACCAGCAAGGCGGTGGCAGAAGTGCTGGCCAGGACCATCGAGTACCTGCAGCCCAACCCAGGCGACGCATTGCTGGATG
CCGGCGAGTCCATGAAGCGCCTGGCAGAGGTGAAGGACTCCCTGGACATAGAGGTCAAGCAGAACTTCATTGACCCCCTC
CAGAACCTATGCGAGAAAGACCTGAAGGAGATCCAGCACCACCTGAAGAAACTGGAGGGCCGCCGCCTGGACTTTGACTA
CAAGAAGAAGCGGCAGGGCAAGATCCCCGATGAGGAGCTACGCCAGGCGCTGGAGAAGTTCGAGGAGTCCAAGGAGGTGG
CAGAAACCAGCATGCACAACCTCCTGGAGACCGACATCGAGCAGGTGAGTCAGCTCTCGGCCCTGGTAGACGCACAGCTG
GACTACCACCGGCAGGCCGTGCAGATCCTGGACGAGCTGGCCGAGAAGCTCAAGCGCAGGATGCGGGAAGCTTCCTCACG
CCCTAAGCGGGAGTATAAGCCCAAGCCCCGGGAGCCCTTTGACCTTGGAGAGCCTGAGCAGTCCAACGGGGGCTTCCCCT
GCACCACAGCCCCCAAGATTGCAGCTTCATCATCTTTCCGATCTTCCGACAAGCCCATCCGGACCCCTAGCCGGAGCATG
CCACCCCTGGACCAGCCGAGCTGCAAGGCGCTGTATGACTTCGAGCCCGAGAACGACGGGGAGCTGGGCTTCCGTGAGGG
CGACGTCATCACGCTGACGAACCAGATCGACGAGAACTGGTACGAGGGCATGCTGGACGGCCAGTCAGGCTTCTTCCCGC
TCAGCTACGTGGAGGTGCTTGTGCCCCTGCCGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 28 .53 RPM |
| SRP007412_cerebellum | 17 .15 RPM |
| SRP007412_heart | 5 .06 RPM |
| SRP007412_kidney | 29 .07 RPM |
| SRP007412_liver | 21 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000141985 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008198 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000000273 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000931 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003122 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1488 | 72.56 | 53.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1516 | 84.17 | 84.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1530 | 81.92 | 84.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1542 | 84.23 | 84.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1700 | 74.16 | 85.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_3542 | 79.47 | 85.57 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000009405 retrocopies