RetrogeneDB ID: | retro_pabe_1700 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19_random:4004625..4005413(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SH3GL1 | ||
Ensembl ID: | ENSPPYG00000009405 | ||
Aliases: | None | ||
Description: | SH3-domain GRB2-like 1 [Source:HGNC Symbol;Acc:10830] |
Percent Identity: | 74.16 % |
Parental protein coverage: | 85.9 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | QPNPGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCEKDLKEIQHHLKKLEGRRLDFDYKKKRQG |
..N..DALLDAGE.MKRLAEVKDSLD.EVK.NFIDPLQNLC.KDLKEIQHHL.KLEG..LDFD.KK.RQG | |
Retrocopy | ESNFSDALLDAGEPMKRLAEVKDSLDTEVKHNFIDPLQNLCKKDLKEIQHHLQKLEGHHLDFD*KK-RQG |
Parental | KIPDEELRQALEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRRMRE |
KIP.EEL.Q.LEKFE.SKEVAETSMHNLLETDI..VSQL.ALV..QLDYHRQA.QILDELA.KLK.R.RE | |
Retrocopy | KIPNEELHQVLEKFEQSKEVAETSMHNLLETDIQ*VSQLPALVEVQLDYHRQAAQILDELAQKLKCRIRE |
Parental | ASSRPKREYKPKPREPFDL-GEPEQSNGGFPCTTAPKIAA-SSSFR-SSDKPIRTPSRSMP-PLDQPSCK |
ASS.PKREYKPKPRE.FDL...PEQSN.GF.CTT.PKIAA.SSSF......P..TPS..M..PLDQ...K | |
Retrocopy | ASSQPKREYKPKPRECFDL<QKPEQSNRGFSCTTVPKIAA>SSSFPILRTSPSWTPSKDMA>PLDQRAAK |
Parental | ALYDFEPEND-GELGFREGDVITLTNQIDENWYEGMLDGQSGFFPLSYVEVLVPLPQ |
.LYD.E.E.D.GELGF.EGDV.TL.NQ..EN.YEGMLDGQS.FF.L..V..LVP..Q | |
Retrocopy | VLYDLELEKD>GELGFHEGDVFTLINQMNEN*YEGMLDGQSRFFLLHLVDRLVPPAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 28 .53 RPM |
SRP007412_cerebellum | 1 .70 RPM | 17 .15 RPM |
SRP007412_heart | 0 .21 RPM | 5 .06 RPM |
SRP007412_kidney | 0 .36 RPM | 29 .07 RPM |
SRP007412_liver | 0 .06 RPM | 21 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000141985 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008198 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000273 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000931 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003122 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009405 | 6 retrocopies |
retro_pabe_1488, retro_pabe_1516, retro_pabe_1530, retro_pabe_1542, retro_pabe_1700 , retro_pabe_3542,
|