RetrogeneDB ID: | retro_pabe_1530 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17_random:9644377..9645149(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SH3GL1 | ||
Ensembl ID: | ENSPPYG00000009405 | ||
Aliases: | None | ||
Description: | SH3-domain GRB2-like 1 [Source:HGNC Symbol;Acc:10830] |
Percent Identity: | 81.92 % |
Parental protein coverage: | 84.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NPGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCEKDLKEIQHHLKKLEGRRLDFDYKKKRQGKI |
N..DALLDAGES.K.LAEVK.SLDIEVKQNFID.LQNLCEKDLK.I.HHL.KL.GRRLD.D.KK.RQGKI | |
Retrocopy | NFSDALLDAGESVKHLAEVKNSLDIEVKQNFIDLLQNLCEKDLKGISHHLQKLDGRRLDLD*KK-RQGKI |
Parental | PDEELRQALEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRRMREAS |
P.EELRQALEKFE.SKEVAE.SMHNLLETDIEQVSQL.ALV.AQLDYH.QA.QILD.LAEKLKRRM.EAS | |
Retrocopy | PEEELRQALEKFEDSKEVAEISMHNLLETDIEQVSQLWALVEAQLDYHWQAMQILDKLAEKLKRRMQEAS |
Parental | SRPKREYKPK-PREPFDLGEPEQSNGGFPCTTAPKIAASSSFRSSDKPIRTPSRSMPPLDQPSCKALYDF |
S.PKREYKPK.PR.P....EPEQSNGGFP.TT.PKIAAS.SF..SDKPIRTPSRSMPPL.QPSCK.LYDF | |
Retrocopy | SCPKREYKPK>PRSPLT-SEPEQSNGGFP*TTLPKIAASFSFPPSDKPIRTPSRSMPPLEQPSCKVLYDF |
Parental | EPENDGELGFREGDVITLTNQIDENWYEGMLDGQSGFFPLSYVEVLVPLP |
.PENDGELGF.EGDV.TL.NQI.E.WY.GMLDGQ.GFF.LSY..VLVPLP | |
Retrocopy | QPENDGELGFHEGDVFTLINQINEKWYQGMLDGQLGFFLLSYLDVLVPLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .15 RPM |
SRP007412_heart | 0 .00 RPM | 5 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 29 .07 RPM |
SRP007412_liver | 0 .00 RPM | 21 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000141985 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008198 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000273 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000931 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003122 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009405 | 6 retrocopies |
retro_pabe_1488, retro_pabe_1516, retro_pabe_1530 , retro_pabe_1542, retro_pabe_1700, retro_pabe_3542,
|