RetrogeneDB ID: | retro_nleu_3075 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397813.1:59210..60175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SH3GL1 | ||
Ensembl ID: | ENSNLEG00000003122 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.79 % |
Parental protein coverage: | 97. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGECMIRHGKELGCESNFGDAL |
KA.TE.LARTI.YLQPNPAS.AKLTMLNTV.KIRGQVKNPGYPQSEGLL..C.I.H.KELG.ESNF.DAL | |
Retrocopy | KALTEMLARTIKYLQPNPASQAKLTMLNTVCKIRGQVKNPGYPQSEGLLSQCLICHQKELGNESNFSDAL |
Parental | LDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCEKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELR |
LDAGESMK..AEVK.SLDIEVKQNFID.LQNLCEKDLK.IQHH..KLEGRRLDFD..KK.QG.IPDEELR | |
Retrocopy | LDAGESMKHPAEVKNSLDIEVKQNFIDFLQNLCEKDLKGIQHHVQKLEGRRLDFD-*KKQQGEIPDEELR |
Parental | QALEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRR-MREASSRPKR |
QALEK.E.SKEVAETSMHNLLETD.EQVSQL.ALV.AQ.DYH.QA.QILDELAEKL..R.MREASS..KR | |
Retrocopy | QALEKLEDSKEVAETSMHNLLETDTEQVSQLPALVEAQPDYHWQAMQILDELAEKLQHR<MREASSHLKR |
Parental | EYKPKPREPFDLGEPEQSNGGFPCTTAPKIAASSSFRSSDKPIRTPSRSMPPLDQPSCKALYDFEPENDG |
EYKPK..EPFDLGEPE.SN.GFPCTT.PKIAASSSFRSSDKPI.TPSRS.PP..QPSCK.LYDF.PENDG | |
Retrocopy | EYKPKSWEPFDLGEPEESNRGFPCTTLPKIAASSSFRSSDKPIWTPSRSVPPREQPSCKVLYDFQPENDG |
Parental | ELGFREGDVITLTNQIDENWYEGMLDGQSGFFPLSYVEVLVLLP |
ELGF.EGDV..L.NQI.ENWY.G.LD.QSGF..LSYV.VLV.LP | |
Retrocopy | ELGFHEGDVFMLINQINENWYQGLLDVQSGFSLLSYVDVLVPLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000141985 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008198 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000273 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000931 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003122 | 2 retrocopies |
retro_nleu_2914, retro_nleu_3075 ,
|
Pongo abelii | ENSPPYG00000009405 | 6 retrocopies |