RetrogeneDB ID:

retro_nleu_3075

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397813.1:59210..60175(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SH3GL1
Ensembl ID:ENSNLEG00000003122
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_3075
AAGGCATTGACAGAAATGCTGGCAAGGACCATCAAGTACCTGCAGCCCAACCCAGCCTCGCAGGCTAAGCTGACCATGCT
CAACACGGTGTGCAAGATCCGGGGCCAGGTGAAGAACCCCGGCTACCCGCAGTCGGAGGGGCTCCTGAGCCAGTGCCTGA
TCTGCCACCAGAAGGAGCTGGGCAACGAGTCCAACTTCAGTGACGCACTGCTGGATGCCGGCGAGTCCATGAAGCACCCG
GCAGAGGTGAAGAACTCCCTGGACATAGAGGTCAAGCAGAACTTCATTGACTTCCTCCAGAACCTGTGTGAGAAAGACCT
GAAGGGGATCCAGCACCACGTGCAGAAGCTGGAGGGCCGCCGCCTGGACTTTGACTAAAAGAAGCAGCAGGGCGAGATCC
CCGATGAGGAGCTGCGCCAGGCACTGGAGAAGCTTGAGGACTCCAAGGAGGTAGCAGAAACCAGCATGCACAACCTCCTG
GAGACCGACACTGAGCAGGTGAGTCAACTCCCGGCCCTGGTGGAGGCGCAGCCGGACTACCACTGGCAGGCCATGCAGAT
CCTGGACGAGCTGGCAGAGAAGCTCCAGCACAGATGCGGGAAGCTTCCTCACACCTCAAGCGGGAGTATAAGCCCAAGTC
CTGGGAGCCCTTTGACCTCGGAGAGCCTGAGGAGTCCAACAGGGGCTTCCCCTGCACCACACTCCCCAAGATCGCAGCTT
CATCCTCTTTCCGATCTTCTGACAAGCCCATTTGGACTCCTAGCAGGAGCGTGCCGCCCCGAGAACAGCCAAGCTGCAAG
GTGCTGTACGACTTCCAGCCTGAGAACGATGGGGAGCTGGGCTTCCATGAGGGCGATGTCTTCATGCTGATCAACCAGAT
CAACGAGAACTGGTACCAGGGCCTGCTGGACGTCCAGTCGGGCTTCTCCCTGCTCAGCTACGTGGATGTGCTCGTGCCTC
TGCCC

ORF - retro_nleu_3075 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.79 %
Parental protein coverage: 97. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGECMIRHGKELGCESNFGDAL
KA.TE.LARTI.YLQPNPAS.AKLTMLNTV.KIRGQVKNPGYPQSEGLL..C.I.H.KELG.ESNF.DAL
RetrocopyKALTEMLARTIKYLQPNPASQAKLTMLNTVCKIRGQVKNPGYPQSEGLLSQCLICHQKELGNESNFSDAL
ParentalLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCEKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELR
LDAGESMK..AEVK.SLDIEVKQNFID.LQNLCEKDLK.IQHH..KLEGRRLDFD..KK.QG.IPDEELR
RetrocopyLDAGESMKHPAEVKNSLDIEVKQNFIDFLQNLCEKDLKGIQHHVQKLEGRRLDFD-*KKQQGEIPDEELR
ParentalQALEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRR-MREASSRPKR
QALEK.E.SKEVAETSMHNLLETD.EQVSQL.ALV.AQ.DYH.QA.QILDELAEKL..R.MREASS..KR
RetrocopyQALEKLEDSKEVAETSMHNLLETDTEQVSQLPALVEAQPDYHWQAMQILDELAEKLQHR<MREASSHLKR
ParentalEYKPKPREPFDLGEPEQSNGGFPCTTAPKIAASSSFRSSDKPIRTPSRSMPPLDQPSCKALYDFEPENDG
EYKPK..EPFDLGEPE.SN.GFPCTT.PKIAASSSFRSSDKPI.TPSRS.PP..QPSCK.LYDF.PENDG
RetrocopyEYKPKSWEPFDLGEPEESNRGFPCTTLPKIAASSSFRSSDKPIWTPSRSVPPREQPSCKVLYDFQPENDG
ParentalELGFREGDVITLTNQIDENWYEGMLDGQSGFFPLSYVEVLVLLP
ELGF.EGDV..L.NQI.ENWY.G.LD.QSGF..LSYV.VLV.LP
RetrocopyELGFHEGDVFMLINQINENWYQGLLDVQSGFSLLSYVDVLVPLP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_3075 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001419853 retrocopies
Gorilla gorilla ENSGGOG000000081983 retrocopies
Macaca mulatta ENSMMUG000000002731 retrocopy
Monodelphis domestica ENSMODG000000009311 retrocopy
Nomascus leucogenys ENSNLEG00000003122 2 retrocopies
retro_nleu_2914, retro_nleu_3075 ,
Pongo abelii ENSPPYG000000094056 retrocopies



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