Parental gene:

HDAC2, ENSPTRG00000018519

Aliases:None
Description:Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:K7B9A4]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:115033074..115068092(-)


>ENSPTRG00000018519
ATGCGCCCACCTCCCCGCGGCCTCCGGAGGTGGTTTGGTGGCCCCCTGCTCGCGAGTTGGTGCCGCTGCCACCTCCGATT
CCGAGCTTTCGGCACCTCTGCCGGGTGGTACCGAATCTTCCCGGCGCCCCCTCCTCTCCTCCCACCGGCCTGCCCTTCCC
CGCGGGACTATCGCCCCCACGTTTCCCTCAGCCCTTTTCTCTCCCGGCCGAGCCGCGGCGGCAGCAGCAGCAGCAGCAGC
AGGAGGAGGAGCCCGGAGGCGGCGGTGGCCGGGGAGCCCATGGCGTACAGTCAAGGAGGCGGCAAAAAAAAAGTCTGCTA
CTACTACGACGGTGATATTGGAAATTATTATTATGGACAGGGTCATCCCATGAAGCCTCATAGAATCCGCATGACCCATA
ACTTGCTGTTAAATTATGGCTTATACAGAAAAATGGAAATATATAGGCCCCATAAAGCCACTGCCGAAGAAATGACAAAA
TATCACAGTGATGAGTATATCAAATTTCTACGGTCAATAAGACCAGATAACATGTCTGAGTATAGTAAGCAGATGCAGAG
ATTTAATGTTGGAGAAGATTGTCCAGTGTTTGATGGACTCTTTGAGTTTTGTCAGCTCTCAACTGGCGGTTCAGTTGCTG
GAGCTGTGAAGTTAAACCGACAACAGACTGATATGGCTGTTAATTGGGCTGGAGGATTACATCATGCTAAGAAATCAGAA
GCATCAGGATTTTGTTACGTTAATGATATTGTGCTTGCCATCCTTGAATTACTAAAGTATCATCAGAGAGTCTTATATAT
TGATATAGATATTCATCATGGTGATGGTGTTGAAGAAGCTTTTTATACAACAGATCGTGTAATGACGGTATCATTCCATA
AATATGGGGAATACTTTCCTGGCACAGGAGACTTGAGGGATATTGGTGCTGGAAAAGGCAAATACTATGCTGTCAATTTT
CCAATGAGAGATGGTATAGATGATGAGTCATATGGGCAGATATTTAAGCCTATTATCTCAAAGGTGATGGAGATGTATCA
ACCTAGTGCTGTGGTATTACAGTGTGGTGCAGACTCATTATCTGGTGATAGACTGGGTTGTTTCAATCTAACAGTCAAAG
GTCATGCTAAATGTGTAGAAGTTGTAAAAACTTTTAACTTACCATTACTGATGCTTGGAGGAGGTGGCTACACAATCCGT
AATGTTGCTCGATGTTGGACATATGAGACTGCAGTTGCCCTTGATTGTGAGATTCCCAATGAGTTGCCATATAATGATTA
CTTTGAGTATTTTGGACCAGACTTCAAACTGCATATTAGTCCTTCAAACATGACAAACCAGAACACTCCAGAATATATGG
AAAAGATAAAACAGCGTTTATTTGAAAATTTGCGCATGTTACCTCATGCACCTGGTGTCCAGATGCAAGCTATTCCAGAA
GATGCTGTTCATGAAGACAGTGGAGATGAAGATGGAGAAGATCCAGACAAGAGAATTTCTATTCGAGCATCAGACAAGCG
GATAGCTTGTGATGAAGAATTCTCAGATTCTGAGGATGAAGGAGAAGGAGGTCGAAGAAATGTGGCTGATCATAAGAAAG
GAGCAAAGAAAGCTAGAATTGAAGAAGATAAGAAAGAAACAGAGGACAAAAAAACAGACGTTAAGGAAGAAGATAAATCC
AAGGACAACAGTGGTGAAAAAACAGATACCAAAGGAACCAAATCAGAACAGCTCAGCAACCCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 25 .95 RPM
SRP007412_cerebellum 47 .10 RPM
SRP007412_heart 33 .40 RPM
SRP007412_kidney 36 .69 RPM
SRP007412_liver 18 .13 RPM
SRP007412_testis 78 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Echinops telfairi ENSETEG00000008468 ortholog_one2many 1 retrogene
retro_etel_488,
Myotis lucifugus ENSMLUG00000003117 ortholog_one2many 4 retrogenes
retro_mluc_1570, retro_mluc_225, retro_mluc_2548, retro_mluc_935,
Monodelphis domestica ENSMODG00000017860 ortholog_one2one 1 retrogene
retro_mdom_597,
Ornithorhynchus anatinus ENSOANG00000003631 ortholog_one2one 1 retrogene
retro_oana_79,
Sorex araneus ENSSARG00000000354 ortholog_one2one 1 retrogene
retro_sara_651,
Ictidomys tridecemlineatus ENSSTOG00000012779 ortholog_one2one 1 retrogene
retro_itri_374,
Tarsius syrichta ENSTSYG00000009363 ortholog_one2one 4 retrogenes
retro_tsyr_1337, retro_tsyr_1355, retro_tsyr_681, retro_tsyr_765,
Tursiops truncatus ENSTTRG00000015043 ortholog_one2one 1 retrogene
retro_ttru_462,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_69 86.88 80.03
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Download FASTA sequences of all ENSPTRG00000018519 retrocopies