RetrogeneDB ID: | retro_itri_374 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393287.1:10008130..10009183(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HDAC2 | ||
Ensembl ID: | ENSSTOG00000012779 | ||
Aliases: | None | ||
Description: | histone deacetylase 2 [Source:HGNC Symbol;Acc:4853] |
Percent Identity: | 70.3 % |
Parental protein coverage: | 74.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVL-YIDIDIHHGDGVEEAF |
..AVKLN.QQ.D.AVNWAGGLHHAKK.EASGFCY..DIVLAILELLKYH.RVL..IDID.HHG.G.EE.F | |
Retrocopy | SSAVKLNKQQRDIAVNWAGGLHHAKKPEASGFCYIDDIVLAILELLKYHPRVL<IIDIDVHHGHGGEEPF |
Parental | YTTDRVMTVSFHKYGEYFPGTGDLRDI-GAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSA |
YTT..V.TVSFHKYGEYFPGTGDL....G.G..KY.AVN.P.RDGIDD.S...IFK...SKV.EM.QPS. | |
Retrocopy | YTTGGVETVSFHKYGEYFPGTGDLQEL<GKG--KYRAVNYPLRDGIDDKSSEAIFKLVMSKVLEMFQPSV |
Parental | VVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCE-IP |
VVLQCG.DSLSG...GCFNLT.KGHAK.VE.VK.FNLP.L.LGGGG.TIRNVARCWTYETAVALD....P | |
Retrocopy | VVLQCGSDSLSGHQVGCFNLTTKGHAKWVEFVKSFNLPMLLLGGGGHTIRNVARCWTYETAVALDTD<FP |
Parental | NELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGD |
NELPYNDYFEYFGPDFKLHISPSNMT.QN..E..EKIKQRLFENLRMLP.AP....Q.IPEDA..E.SGD | |
Retrocopy | NELPYNDYFEYFGPDFKLHISPSNMTDQNMKEDLEKIKQRLFENLRMLPRAP--EIQSIPEDAIPEESGD |
Parental | EDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKADVKEEDK |
ED.EDPDKRISI..SD...AC.EEFSDS..EGEGG..N....KK.AK....E.D..E.E.....V.EE.. | |
Retrocopy | EDEEDPDKRISICSSDN*TACEEEFSDSDEEGEGGHKNSSGFKK-AKGVKTEKDPEEKEE----VTEEER |
Parental | SKDNSGEKTDTKGAKSE |
.K....EK...KG.K.E | |
Retrocopy | TKE---EKPEAKGVKQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000002649 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008468 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003117 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017860 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003631 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018519 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000354 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012779 | 1 retrocopy |
retro_itri_374 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000016240 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009363 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015043 | 1 retrocopy |