RetrogeneDB ID: | retro_oana_79 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig46555:5589..6771(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HDAC2 | ||
Ensembl ID: | ENSOANG00000003631 | ||
Aliases: | None | ||
Description: | histone deacetylase 2 [Source:HGNC Symbol;Acc:4853] |
Percent Identity: | 58.04 % |
Parental protein coverage: | 91.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGE- |
MKP.RIRM.H.L.L.Y.LYR.MEI.RPHKA...E....H..EY..FL....PDN..E...Q..RFNVGE. | |
Retrocopy | MKPQRIRMAHALVLSYDLYRHMEIFRPHKAVEPELLAFHDNEYVNFLSGVSPDNYREFVYQLKRFNVGEA |
Parental | -DCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH |
.DCPVFDGL..F.Q...G.S...A..LN.QQ.D..VNW.GGLHHAK.SEASGFCY.NDIVL.ILELLKYH | |
Retrocopy | TDCPVFDGLYVFQQSCSGASIDAAHRLNHQQADICVNWSGGLHHAKRSEASGFCYLNDIVLGILELLKYH |
Parental | QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESY |
.RV.YIDID.HHGDGVEEAFY.T.RVMTVSFHK.G..FPGTGD..DIG...GKYY.VN.P..DG.DDE.. | |
Retrocopy | ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGNFFPGTGDVTDIGVSSGKYYSVNVPLNDGMDDENF |
Parental | GQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRN |
...FK.II......Y.P.A.VLQCGADSL.GDRLG.FNL..KGHA.CV..V...N.PLL.LGGGGYTIRN | |
Retrocopy | VELFKVIIGRCVDVYRPGAIVLQCGADSLTGDRLGRFNLSIKGHASCVQFVRNLNIPLLVLGGGGYTIRN |
Parental | VARCWTYETAVALDC--EIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPH |
VARCW.YET.V.L............NDY..Y..PDF.LH..PS.M.N.NTPE..EK......ENLR.... | |
Retrocopy | VARCWAYETGVVLNKHEDMSDQISLNDYYDYYAPDFQLHLTPSAMPNYNTPEHLEKLRIKILENLRYVEK |
Parental | APGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEFSDS |
APGVQ....P.D..H.D....D..D..K...........A....F..S | |
Retrocopy | APGVQFAHVPPDFLHHD----DDSDEEKQLQVFDEGGGLAVGDRFGSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 62 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 38 .11 RPM |
SRP007412_heart | 0 .00 RPM | 20 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .34 RPM |
SRP007412_liver | 0 .00 RPM | 5 .79 RPM |
SRP007412_testis | 0 .00 RPM | 79 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000002649 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008468 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003117 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017860 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000003631 | 1 retrocopy |
retro_oana_79 ,
|
Pan troglodytes | ENSPTRG00000018519 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000354 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012779 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009363 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015043 | 1 retrocopy |