RetrogeneDB ID: | retro_rnor_1200 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:69610227..69611579(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tuba1a | ||
Ensembl ID: | ENSRNOG00000004559 | ||
Aliases: | Tuba1a, Tuba1 | ||
Description: | Tubulin alpha-1A chain [Source:UniProtKB/Swiss-Prot;Acc:P68370] |
Percent Identity: | 94.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVD- |
MRECISIH.GQAGVQ.GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV.RAVFVD. | |
Retrocopy | MRECISIHAGQAGVQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVLRAVFVD< |
Parental | LEP-TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVF |
L.P.TVIDEVRTGTY.QLFHPE.LITGKEDAANNYA.GHYTIGKEIIDL.LDRIRKLADQCTGLQGFLVF | |
Retrocopy | LNP<TVIDEVRTGTYCQLFHPE*LITGKEDAANNYACGHYTIGKEIIDLILDRIRKLADQCTGLQGFLVF |
Parental | HSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPA-PQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE |
HSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYP...QVSTAVVE.YNSILTTHTTLEHSDCAFMVDNE | |
Retrocopy | HSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPT>AQVSTAVVESYNSILTTHTTLEHSDCAFMVDNE |
Parental | AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS |
AIYDICRRNLDIERPTYTN.NRLI.QIVSSITA.LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI. | |
Retrocopy | AIYDICRRNLDIERPTYTNFNRLISQIVSSITAPLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIF |
Parental | AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWC |
AEKAYHEQLSVAEITNACFEPANQMVKCDP.HGKYMACCLLYRGDVVPKDVNAAIATIKTKR.IQFVDWC | |
Retrocopy | AEKAYHEQLSVAEITNACFEPANQMVKCDPHHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWC |
Parental | PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE |
PTGFKVGINYQPPTVV.GGDLAKVQRAVCMLSNTTAIA.AWARLD.KFD.MYAKRAFVHWYVGEGMEEGE | |
Retrocopy | PTGFKVGINYQPPTVVLGGDLAKVQRAVCMLSNTTAIAKAWARLDRKFDMMYAKRAFVHWYVGEGMEEGE |
Parental | FSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY |
FSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY | |
Retrocopy | FSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 701 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 71 .46 RPM |
SRP017611_liver | 0 .00 RPM | 17 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001489 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020894 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004121 | 1 retrocopy | |
Equus caballus | ENSECAG00000013798 | 1 retrocopy | |
Homo sapiens | ENSG00000167552 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017836 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027812 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004645 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003597 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004559 | 3 retrocopies |
retro_rnor_1200 , retro_rnor_2006, retro_rnor_446,
|
Rattus norvegicus | ENSRNOG00000015544 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000005749 | 4 retrocopies |