Parental gene:

ENSSSCG00000014569

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:9:776500..779650(-)


>ENSSSCG00000014569
CAGCCGTCCAGACTAAGGAAGACCCGGAAACTCCGCGGCCACGTGAGCCACGGCCACGGCCGCATCGGCAAACACCGGAA
GCACCCAGGAGGCCGGGGCAATGCGGGTGGCATGCATCACCACAGGATCAACTTCGACAAATATCACCCGGGATACTTTG
GAAAAGTTGGTATGAGGCATTACCACTTAAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTCGATAAATTGTGGACC
TTGGTCAGTGAGCAGACACGGATAAATGCTGCCAAGAACAAGACCGGAGCTGCTCCTATCATTGACGTGGTGCGATCGGG
TTACTACAAAGTTCTGGGGAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAATTTTTCAGCAGACGAGCTG
AAGAGAAGATTAAGGGTGTTGGGGGGGCCTGTGTCCTGGTAGCTTGA

Library Parental gene expression (RPM)
SRP014902_placenta 230 .29 RPM
SRP014902_testis 256 .44 RPM
SRP018288_heart 208 .27 RPM
SRP018288_kidney 214 .84 RPM
SRP018288_liver 448 .23 RPM
SRP018288_lung 205 .38 RPM
SRP018856_adipose 219 .29 RPM
SRP035408_brain 114 .27 RPM
SRP035408_liver 176 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 ortholog_one2one 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 ortholog_one2one 1 retrogene
retro_cjac_211,
Equus caballus ENSECAG00000022469 ortholog_one2one 1 retrogene
retro_ecab_289,
Ficedula albicollis ENSFALG00000000924 possible_ortholog 1 retrogene
retro_falb_20,
Felis catus ENSFCAG00000008411 ortholog_one2one 13 retrogenes
retro_fcat_1162, retro_fcat_1285, retro_fcat_1305, retro_fcat_1380, retro_fcat_1635, retro_fcat_1761, retro_fcat_1805, retro_fcat_1974, retro_fcat_469, retro_fcat_652, retro_fcat_673, retro_fcat_817, retro_fcat_907,
Loxodonta africana ENSLAFG00000000425 ortholog_one2one 2 retrogenes
retro_lafr_25, retro_lafr_50,
Myotis lucifugus ENSMLUG00000016616 possible_ortholog 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Monodelphis domestica ENSMODG00000007480 possible_ortholog 1 retrogene
retro_mdom_575,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Oryctolagus cuniculus ENSOCUG00000005442 ortholog_one2one 1 retrogene
retro_ocun_12,
Rattus norvegicus ENSRNOG00000014214 possible_ortholog 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Tupaia belangeri ENSTBEG00000000046 possible_ortholog 20 retrogenes
retro_tbel_1093, retro_tbel_1101, retro_tbel_1148, retro_tbel_1152, retro_tbel_1223, retro_tbel_1338, retro_tbel_1639, retro_tbel_2017, retro_tbel_2606, retro_tbel_2777, retro_tbel_298, retro_tbel_3111, retro_tbel_3496, retro_tbel_3881, retro_tbel_4566, retro_tbel_460, retro_tbel_544, retro_tbel_643, retro_tbel_925, retro_tbel_937,
Taeniopygia guttata ENSTGUG00000008355 possible_ortholog 1 retrogene
retro_tgut_18,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_527 72.55 66.89
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2. retro_sscr_574 82.00 99.32
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3. retro_sscr_587 70.27 99.32
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4. retro_sscr_588 70.95 99.32
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5. retro_sscr_644 69.59 98.65
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6. retro_sscr_668 84.14 97.97
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7. retro_sscr_677 77.18 99.32
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8. retro_sscr_769 70.40 84.46
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9. retro_sscr_809 57.89 51.35
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Download FASTA sequences of all ENSSSCG00000014569 retrocopies