Parental gene:

RPS15, ENSSSCG00000023248

Aliases:None
Description:Sus scrofa ribosomal protein S15 (RPS15), mRNA. [Source:RefSeq mRNA;Acc:NM_214334]
Organism:Pig (Sus scrofa)
Coordinates:2:77933424..77937774(-)


>ENSSSCG00000023248
ATGGCGGAAGTAGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGA
CATGTCTTACGAGCAGCTGATGCAGCTGTACAGCGCACGGCAGCGGCGGCGGCTGAACCGAGGTCTGAGGAGGAAGCAGC
ACTCGCTGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCACCCATGGAGAAGCCAGAGGTAGTGAAGACGCACCTG
CGAGACATGATCATCCTGCCCGAGATGGTGGGCAGCATGGTAGGTGTCTACAATGGCAAGACCTTCAACCAGGTGGAGAT
CAAGCCTGAGATGATTGGACACTACCTAGGCGAATTCTCCATCACGTACAAGCCTGTGAAGCATGGCCGGCCTGGTATCG
GGGCCACGCACTCCTCCCGCTTCATCCCCCTCAAGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 1184 .23 RPM
SRP014902_testis 1324 .36 RPM
SRP018856_adipose 1183 .84 RPM
SRP018288_kidney 352 .16 RPM
SRP018288_lung 474 .51 RPM
SRP018288_liver 268 .81 RPM
SRP018288_heart 275 .79 RPM
SRP035408_liver 365 .57 RPM
SRP035408_brain 307 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005632 possible_ortholog 13 retrogenes
retro_cjac_143, retro_cjac_151, retro_cjac_1517, retro_cjac_1607, retro_cjac_1672, retro_cjac_1714, retro_cjac_2069, retro_cjac_2236, retro_cjac_2596, retro_cjac_2656, retro_cjac_48, retro_cjac_756, retro_cjac_86,
Cavia porcellus ENSCPOG00000003968 possible_ortholog 1 retrogene
retro_cpor_495,
Dasypus novemcinctus ENSDNOG00000000706 ortholog_one2one 2 retrogenes
retro_dnov_173, retro_dnov_85,
Echinops telfairi ENSETEG00000008645 possible_ortholog 1 retrogene
retro_etel_2,
Gorilla gorilla ENSGGOG00000002818 possible_ortholog 4 retrogenes
retro_ggor_1136, retro_ggor_116, retro_ggor_141, retro_ggor_1851,
Monodelphis domestica ENSMODG00000005119 ortholog_one2one 1 retrogene
retro_mdom_1335,
Mus musculus ENSMUSG00000063457 possible_ortholog 8 retrogenes
retro_mmus_1270, retro_mmus_208, retro_mmus_2734, retro_mmus_2786, retro_mmus_3166, retro_mmus_3642, retro_mmus_520, retro_mmus_917,
Nomascus leucogenys ENSNLEG00000001651 ortholog_one2one 8 retrogenes
retro_nleu_105, retro_nleu_1858, retro_nleu_1922, retro_nleu_2390, retro_nleu_2465, retro_nleu_2559, retro_nleu_461, retro_nleu_544,
Otolemur garnettii ENSOGAG00000015776 possible_ortholog 4 retrogenes
retro_ogar_194, retro_ogar_210, retro_ogar_2237, retro_ogar_96,
Pongo abelii ENSPPYG00000009317 possible_ortholog 4 retrogenes
retro_pabe_1233, retro_pabe_2321, retro_pabe_67, retro_pabe_893,
Pan troglodytes ENSPTRG00000010200 possible_ortholog 1 retrogene
retro_ptro_122,
Rattus norvegicus ENSRNOG00000024603 possible_ortholog 8 retrogenes
retro_rnor_1384, retro_rnor_1711, retro_rnor_1712, retro_rnor_178, retro_rnor_2086, retro_rnor_2114, retro_rnor_2642, retro_rnor_700,
Ictidomys tridecemlineatus ENSSTOG00000006423 possible_ortholog 2 retrogenes
retro_itri_722, retro_itri_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_271 69.29 87.59
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Download FASTA sequences of all ENSSSCG00000023248 retrocopies