RetrogeneDB ID: | retro_acar_135 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 5:115624415..115624921(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTSF1 | ||
Ensembl ID: | ENSACAG00000014260 | ||
Aliases: | None | ||
Description: | gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565] |
Percent Identity: | 64.12 % |
Parental protein coverage: | 94.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MKTEDN---YVDDLDPENLMQCPYDKNHQIRACRFPYHLVKCRKNHPDIVQKLVMCPFNARHYVPREEIS |
M...DN...YVD.LDP..L.QCPY.K.HQI.A..FPYH.VKC.K...DIV.KLVMC.FNA.H.VPREE.S | |
Retrocopy | MNRDDNYVQYVDALDPDKLLQCPYEKSHQISAWSFPYHFVKCHKYQLDIVKKLVMCSFNACHRVPREEFS |
Parental | QHISHCDDKRS-IEQDIANEQKNYRREVNVIH-SWQSPPCEEDWDKDLED-SPATAFIWG-TSRSVNRSE |
Q.I.....K.S.I.Q.IAN.Q.NYRREVNV...SWQ..PCEEDW.K.L....PA.AFIW..TS..VN.S. | |
Retrocopy | QNITN**LKKS<IQQNIANGQNNYRREVNVKRSSWQPHPCEEDWEKELKNPPPASAFIWDTTSCFVNKSG |
Parental | --SSTVVGYKNHLASCLRAPKSLPNVLPWK |
...ST.VGYK.HLASCLRAPKSL.NVLPWK | |
Retrocopy | I*ISTTVGYKKHLASCLRAPKSLLNVLPWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 0 .98 RPM |
SRP009831_brain | 0 .00 RPM | 1 .28 RPM |
SRP009831_dewlap | 0 .00 RPM | 176 .47 RPM |
SRP009831_embryo | 0 .00 RPM | 1 .78 RPM |
SRP009831_heart | 0 .00 RPM | 1 .19 RPM |
SRP009831_liver | 0 .00 RPM | 1 .27 RPM |
SRP009831_lung | 0 .00 RPM | 1 .51 RPM |
SRP009831_ovary | 0 .00 RPM | 173 .31 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 0 .07 RPM |