RetrogeneDB ID: | retro_fcat_940 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:22891437..22891767(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010156 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.27 % |
Parental protein coverage: | 66.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VPRAEISHHISSCDDKSCIEQ-DVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTANYC |
V..AEI.H.IS.CDDKSCIEQ.DVVNQTRNLGQETLAE.TWQCPP..E..D..LWEQT.TPF..GTANYC | |
Retrocopy | VAQAEIGHRISNCDDKSCIEQEDVVNQTRNLGQETLAENTWQCPPYHEE*DNNLWEQTTTPFFVGTANYC |
Parental | GNNSPASNTVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQ |
GNNSPASN.V.E..SNL.SGM.VPKSLPYV.P.K.NGNAQ | |
Retrocopy | GNNSPASNIVRERNSNLVSGMHVPKSLPYVPPCKINGNAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .62 RPM |
SRP017611_liver | 0 .00 RPM | 0 .10 RPM |