RetrogeneDB ID: | retro_fcat_1543 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:36490549..36491035(-) | ||
Located in intron of: | ENSFCAG00000024696 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010156 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.98 % |
Parental protein coverage: | 98.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQ-VPRAEISHHISSCDDK |
..SLDPEKLL..PYDKNHQIRACRFPYHL.KCR.NHPDV.NKLATCPF.A.H..VP.AEISH.ISSCDDK | |
Retrocopy | INSLDPEKLL*FPYDKNHQIRACRFPYHLTKCRNNHPDVENKLATCPFSAHHR<VPQAEISHYISSCDDK |
Parental | SCIEQDVVNQTRNLGQETLAESTWQC-PPCDEDWDKDLWEQTSTPFVWGTANYCGNNSPASNTVMEHKSN |
SCIEQDVVNQTRN.GQETLA.STWQC.PPCDEDWDKDLWEQTSTPFVWGTANYCG.NSPASN.VMEHKS. | |
Retrocopy | SCIEQDVVNQTRNPGQETLAKSTWQC>PPCDEDWDKDLWEQTSTPFVWGTANYCGSNSPASNIVMEHKSS |
Parental | LASGMRVPKSLPYVLPWKNNGNAQ |
LASGM..PKSL.YVLPWKNNGN.Q | |
Retrocopy | LASGMCIPKSLLYVLPWKNNGNEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .62 RPM |
SRP017611_liver | 0 .00 RPM | 0 .10 RPM |