RetrogeneDB ID: | retro_acar_92 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:82225137..82225473(-) | ||
Located in intron of: | ENSACAG00000017569 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTSF1 | ||
Ensembl ID: | ENSACAG00000014260 | ||
Aliases: | None | ||
Description: | gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565] |
Percent Identity: | 63.48 % |
Parental protein coverage: | 65.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQCPYDKNHQIRACRFPYHLVKCRKNHPDIVQKLVMCPFNARHYVPREEISQHISHCDDKRSIEQDIANE |
.QCPYDKNHQIRAC.FPYHLV.C.K.HPDIV.KLVMCPFNA.H.VPREE..QHI..CDD...I.Q.I... | |
Retrocopy | LQCPYDKNHQIRACMFPYHLVTCCKHHPDIVRKLVMCPFNACHQVPREELCQHIANCDD*KLIVQGITFG |
Parental | QKNYRREV--NVIH-SWQSPPCEEDWDKDLEDSPATAFIWGTSRS |
Q.N.RR.V..NVIH.SWQ.PP.EE.WDK.....P.....WG...S | |
Retrocopy | QNNNRRKVNDNVIHSSWQPPPSEENWDKEMDNPPPS---WGSPSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 0 .98 RPM |
SRP009831_brain | 0 .00 RPM | 1 .28 RPM |
SRP009831_dewlap | 0 .00 RPM | 176 .47 RPM |
SRP009831_embryo | 0 .00 RPM | 1 .78 RPM |
SRP009831_heart | 0 .00 RPM | 1 .19 RPM |
SRP009831_liver | 0 .00 RPM | 1 .27 RPM |
SRP009831_lung | 0 .05 RPM | 1 .51 RPM |
SRP009831_ovary | 0 .00 RPM | 173 .31 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 0 .07 RPM |