RetrogeneDB ID: | retro_rnor_2525 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:74389739..74389993(-) | ||
Located in intron of: | ENSRNOG00000010865 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gtsf1 | ||
Ensembl ID: | ENSRNOG00000036831 | ||
Aliases: | Gtsf1, RGD1310791 | ||
Description: | gametocyte-specific factor 1 [Source:RefSeq peptide;Acc:NP_001073175] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 52.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTASFCGN- |
R...S.H..SCD...C.E..VVN.T...GQE.LA.STWQC.P..E.W.K.LW.QTSTPFVW...SF.GN. | |
Retrocopy | RFKSSQHDESCDSEGCTEEHVVNRTKKPGQEILARSTWQCLPLGENWNKNLW*QTSTPFVWDADSFYGN< |
Parental | NSPANNIVMEHKSNLASG |
..P.N.IV..H..N..SG | |
Retrocopy | HGPTNKIVIKH--NVVSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |