Parental gene:

GTSF1, ENSACAG00000014260

Aliases:None
Description:gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565]
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL343252.1:294809..318529(-)


>ENSACAG00000014260
ATGAAAACAGAAGACAACTATGTTGATGATTTGGATCCTGAGAATCTAATGCAATGCCCATATGACAAAAATCATCAGAT
TAGGGCATGTAGGTTTCCCTACCACCTTGTTAAATGCCGTAAGAACCATCCAGACATTGTGCAAAAGCTGGTCATGTGCC
CATTTAATGCCCGTCATTATGTTCCCAGAGAAGAGATCAGCCAACATATATCACACTGTGATGACAAAAGAAGCATTGAG
CAGGACATCGCAAATGAGCAGAAAAACTATAGAAGAGAAGTTAATGTCATACATTCATGGCAATCTCCTCCATGTGAAGA
AGATTGGGACAAAGATCTGGAGGACTCACCCGCCACTGCCTTCATTTGGGGCACCAGCCGTTCTGTAAACAGATCTGAAT
CAAGTACAGTGGTGGGATACAAGAACCACCTAGCATCATGTCTGCGAGCTCCTAAATCCTTGCCTAATGTATTACCATGG
AAGAACAGTGTTTGGGCCTCCAACTCCCAG

Library Parental gene expression (RPM)
SRP009831_adrenal 0 .98 RPM
SRP009831_brain 1 .28 RPM
SRP009831_dewlap 176 .47 RPM
SRP009831_embryo 1 .78 RPM
SRP009831_heart 1 .19 RPM
SRP009831_liver 1 .27 RPM
SRP009831_lung 1 .51 RPM
SRP009831_ovary 173 .31 RPM
SRP009831_skeletal_muscle 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000029590 within_species_paralog 1 retrogene
retro_acar_141,
Ailuropoda melanoleuca ENSAMEG00000000939 ortholog_one2one 6 retrogenes
retro_amel_1420, retro_amel_324, retro_amel_338, retro_amel_639, retro_amel_724, retro_amel_796,
Bos taurus ENSBTAG00000018085 ortholog_one2one 1 retrogene
retro_btau_1316,
Canis familiaris ENSCAFG00000006465 ortholog_one2many 2 retrogenes
retro_cfam_377, retro_cfam_592,
Choloepus hoffmanni ENSCHOG00000001659 ortholog_one2one 2 retrogenes
retro_chof_1261, retro_chof_950,
Callithrix jacchus ENSCJAG00000018968 ortholog_one2one 1 retrogene
retro_cjac_904,
Dasypus novemcinctus ENSDNOG00000001438 ortholog_one2one 4 retrogenes
retro_dnov_2233, retro_dnov_2536, retro_dnov_256, retro_dnov_76,
Equus caballus ENSECAG00000013618 ortholog_one2one 2 retrogenes
retro_ecab_688, retro_ecab_806,
Echinops telfairi ENSETEG00000009310 ortholog_one2one 1 retrogene
retro_etel_1619,
Felis catus ENSFCAG00000010156 ortholog_one2many 5 retrogenes
retro_fcat_1252, retro_fcat_1302, retro_fcat_1543, retro_fcat_557, retro_fcat_940,
Loxodonta africana ENSLAFG00000016318 ortholog_one2one 1 retrogene
retro_lafr_1185,
Macropus eugenii ENSMEUG00000016206 ortholog_one2many 1 retrogene
retro_meug_942,
Microcebus murinus ENSMICG00000008444 ortholog_one2one 1 retrogene
retro_mmur_842,
Myotis lucifugus ENSMLUG00000012961 ortholog_one2many 3 retrogenes
retro_mluc_1177, retro_mluc_1286, retro_mluc_56,
Mustela putorius furo ENSMPUG00000005669 ortholog_one2many 3 retrogenes
retro_mputfur_1249, retro_mputfur_155, retro_mputfur_62,
Otolemur garnettii ENSOGAG00000017227 ortholog_one2one 2 retrogenes
retro_ogar_2617, retro_ogar_3251,
Rattus norvegicus ENSRNOG00000036831 ortholog_one2one 1 retrogene
retro_rnor_2525,
Tarsius syrichta ENSTSYG00000004679 ortholog_one2one 2 retrogenes
retro_tsyr_1437, retro_tsyr_1880,
Tursiops truncatus ENSTTRG00000004470 ortholog_one2one 1 retrogene
retro_ttru_249,
Vicugna pacos ENSVPAG00000007016 ortholog_one2one 5 retrogenes
retro_vpac_103, retro_vpac_203, retro_vpac_223, retro_vpac_490, retro_vpac_95,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_92 63.48 65.88
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2. retro_acar_135 64.12 94.71
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3. retro_acar_143 60.93 82.94
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Download FASTA sequences of all ENSACAG00000014260 retrocopies