RetrogeneDB ID: | retro_amel_1764 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194239.1:69028..69312(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSAMEG00000005384 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 76.53 % |
Parental protein coverage: | 51.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MREYKLVVLGSGGV-GKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG-TEQFTAMR |
M.EYK...LG.GG..GKSALTVQFV.GIFVEKYDP.IEDSYR.QVE.DCQ.CM.EILDTAG.TE.FT..R | |
Retrocopy | MHEYKPMALGLGGM<GKSALTVQFVPGIFVEKYDPMIEDSYRRQVEMDCQKCMPEILDTAG<TEKFTVIR |
Parental | DLYMKNGQ-GFALVYSITAQSTFNDLQD |
DLYMKNG..GFA..YSITAQ.TFNDL.D | |
Retrocopy | DLYMKNGL>GFAQAYSITAQPTFNDL*D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |