RetrogeneDB ID: | retro_etel_1196 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_226387:2633..3090(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSETEG00000016893 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 73.55 % |
Parental protein coverage: | 83.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MREYKLVVLGSGGVGK-SALTVQFVQGIFVEKYDP-TIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR |
M.EYKLVVLGSGG....S.L..QFVQ...V..Y....IE...RKQVEVDCQQCM..ILDTA...QFT..R | |
Retrocopy | MCEYKLVVLGSGGCWE<SLL*AQFVQXXXVKNYTQ<MIEECFRKQVEVDCQQCMPQILDTAEPDQFTTKR |
Parental | DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW |
DL.MKNG.GFALVYSITAQSTFNDLQ..REQIL.VKDTEDVP.ILVGN.CD.ED.R.VGKEQGQNLARQ. | |
Retrocopy | DLSMKNGPGFALVYSITAQSTFNDLQSPREQILWVKDTEDVPVILVGNQCDREDKRMVGKEQGQNLARQ* |
Parental | CNCAFLESSAKSKIN |
CN.AFLESSAK.K.N | |
Retrocopy | CNGAFLESSAK*KNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |