RetrogeneDB ID: | retro_cjac_1671 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 18:14151664..14152214(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSCJAG00000013392 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 86.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQFTA-MR |
M.EYKLV.LGSGGVGKSAL.VQFVQGIF...YD.T.EDSYRK..VEVDCQQCMLEILDTA..EQFTA.MR | |
Retrocopy | MHEYKLVILGSGGVGKSALMVQFVQGIFAGNYDLTVEDSYRKL>VEVDCQQCMLEILDTAEAEQFTA<MR |
Parental | DLYMKNGQGFALVYSI-TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ |
DLY.KNG.GFAL.YSI..AQSTFN.L..LREQILRVKDTEDVPMILVGNKCDLEDE.VVGKEQGQNLARQ | |
Retrocopy | DLYLKNG*GFALAYSI<SAQSTFNSL*NLREQILRVKDTEDVPMILVGNKCDLEDE*VVGKEQGQNLARQ |
Parental | WCNCAFLESSAKSKINVNEIFYDLVRQINRK-TPVEKKKPKKKSCLLL |
WCNCAFLESSAKSKINVNEIFYDLVRQINRK.TPV.KK.PKKKSCLLL | |
Retrocopy | WCNCAFLESSAKSKINVNEIFYDLVRQINRK<TPVGKKNPKKKSCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 16 .55 RPM |
SRP051959_heart | 0 .02 RPM | 21 .98 RPM |
SRP051959_kidney | 0 .00 RPM | 12 .38 RPM |
SRP051959_liver | 0 .00 RPM | 14 .66 RPM |
SRP051959_lung | 0 .00 RPM | 26 .00 RPM |
SRP051959_lymph_node | 0 .02 RPM | 32 .99 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 15 .46 RPM |
SRP051959_spleen | 0 .00 RPM | 23 .61 RPM |