RetrogeneDB ID: | retro_etel_176 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3018:4568..5015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1A | ||
Ensembl ID: | ENSETEG00000016893 | ||
Aliases: | None | ||
Description: | RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855] |
Percent Identity: | 79.47 % |
Parental protein coverage: | 81.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MREYKLVVLGSGG-VGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD |
MREYKLVVLGSGG..GKS.LT..FVQGIFV..YD.TIED..RKQVE.DCQ.CM.EILDTAG..QFTAMRD | |
Retrocopy | MREYKLVVLGSGG>AGKSVLTARFVQGIFVKNYDSTIEDCCRKQVEADCQ*CMPEILDTAGPDQFTAMRD |
Parental | LYMKNGQG-FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW |
L..KNG.G.F..VYSIT..ST..DLQ.LREQIL.VKD.EDVP.ILVGNKCDLEDER.VGKEQGQNLARQW | |
Retrocopy | L*LKNGPG<FERVYSITTESTLHDLQGLREQILWVKDAEDVPVILVGNKCDLEDERIVGKEQGQNLARQW |
Parental | CNCAFLESSAK |
.NCAFLESSAK | |
Retrocopy | YNCAFLESSAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |