RetrogeneDB ID: | retro_btau_1226 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:64263043..64263381(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2V1 | ||
Ensembl ID: | ENSBTAG00000027316 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 variant 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZ52] |
Percent Identity: | 54.62 % |
Parental protein coverage: | 80.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK-IECGPKYPEAPPFVRFVTKINMNGVNSSNG |
D.T.S.GL.D....T......M.I.P.R..YEN.IYSLK.IEC.PKY.EAP.........NMNG.N..N. | |
Retrocopy | DATGS*GLKDNTHDT--KQPEMLIRPLRKRYEN*IYSLK<IECRPKYSEAPSPHKIYSN-NMNGLNRANN |
Parental | VVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN |
...P.....L.KWQNSYSIKVVL.EL..L.M.K.NMKL.Q.PE.QCYSN | |
Retrocopy | --EPQELYLLGKWQNSYSIKVVL*ELWHLRMLKINMKLLQSPERQCYSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 63 .52 RPM |
ERP005899_muscle | 0 .00 RPM | 80 .24 RPM |
SRP017611_brain | 0 .00 RPM | 79 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .88 RPM |
SRP017611_liver | 0 .00 RPM | 48 .10 RPM |
SRP030211_testis | 0 .00 RPM | 145 .47 RPM |