Parental gene:

UBE2V1, ENSCJAG00000036984

Aliases:None
Description:ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001192018]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:43977610..44008873(-)


>ENSCJAG00000036984
ATGGCAGCCACCACGGGCTCGGGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGGCCAGAAAGG
AGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGGACAGGGATGATAATTG
GGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCC
TTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTTAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGT
GCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGCTTCGGCGCCTAATGATGTCTAAAGAAAACA
TGAAACTCCCTCAGCCGCCTGAAGGACAGTGTTACAGCAATTAA

Library Parental gene expression (RPM)
SRP051959_colon 5 .24 RPM
SRP051959_heart 5 .47 RPM
SRP051959_kidney 7 .65 RPM
SRP051959_liver 5 .65 RPM
SRP051959_lung 7 .40 RPM
SRP051959_lymph_node 7 .72 RPM
SRP051959_skeletal_muscle 6 .97 RPM
SRP051959_spleen 7 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027316 ortholog_one2one 4 retrogenes
retro_btau_1196, retro_btau_1226, retro_btau_1307, retro_btau_415,
Callithrix jacchus ENSCJAG00000032182 within_species_paralog 1 retrogene
retro_cjac_814,
Homo sapiens ENSG00000244687 possible_ortholog 4 retrogenes
retro_hsap_2175, retro_hsap_2440, retro_hsap_2884, retro_hsap_4192,
Loxodonta africana ENSLAFG00000027359 ortholog_one2one 2 retrogenes
retro_lafr_1026, retro_lafr_1221,
Macaca mulatta ENSMMUG00000012228 possible_ortholog 6 retrogenes
retro_mmul_1722, retro_mmul_2382, retro_mmul_351, retro_mmul_436, retro_mmul_629, retro_mmul_907,
Mustela putorius furo ENSMPUG00000017557 ortholog_one2one 3 retrogenes
retro_mputfur_1522, retro_mputfur_384, retro_mputfur_834,
Nomascus leucogenys ENSNLEG00000006987 ortholog_one2one 8 retrogenes
retro_nleu_1554, retro_nleu_1612, retro_nleu_1996, retro_nleu_2206, retro_nleu_2773, retro_nleu_3025, retro_nleu_304, retro_nleu_566,
Oryctolagus cuniculus ENSOCUG00000026172 possible_ortholog 4 retrogenes
retro_ocun_1450, retro_ocun_1481, retro_ocun_454, retro_ocun_539,
Otolemur garnettii ENSOGAG00000025894 possible_ortholog 12 retrogenes
retro_ogar_1381, retro_ogar_1391, retro_ogar_153, retro_ogar_1637, retro_ogar_1929, retro_ogar_2027, retro_ogar_2478, retro_ogar_2984, retro_ogar_3172, retro_ogar_3338, retro_ogar_620, retro_ogar_80,
Pan troglodytes ENSPTRG00000013615 ortholog_one2many 1 retrogene
retro_ptro_64,
Rattus norvegicus ENSRNOG00000025580 ortholog_one2many 21 retrogenes
retro_rnor_1014, retro_rnor_1032, retro_rnor_1291, retro_rnor_1609, retro_rnor_1649, retro_rnor_1650, retro_rnor_1651, retro_rnor_2055, retro_rnor_2282, retro_rnor_2406, retro_rnor_2407, retro_rnor_2412, retro_rnor_2488, retro_rnor_2489, retro_rnor_2490, retro_rnor_2534, retro_rnor_2535, retro_rnor_2905, retro_rnor_819, retro_rnor_881, retro_rnor_991,
Sus scrofa ENSSSCG00000030632 ortholog_one2one 1 retrogene
retro_sscr_431,
Ictidomys tridecemlineatus ENSSTOG00000014322 possible_ortholog 6 retrogenes
retro_itri_1001, retro_itri_1002, retro_itri_1134, retro_itri_1452, retro_itri_1600, retro_itri_992,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_462 86.39 100.00
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2. retro_cjac_974 93.92 100.00
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3. retro_cjac_1076 66.43 95.92
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4. retro_cjac_1952 71.11 91.16
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5. retro_cjac_2810 77.05 80.95
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6. retro_cjac_2865 78.91 99.32
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7. retro_cjac_3081 91.89 100.00
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8. retro_cjac_3140 83.11 99.32
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9. retro_cjac_3258 77.78 77.55
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10. retro_cjac_4089 82.55 100.00
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Download FASTA sequences of all ENSCJAG00000036984 retrocopies