RetrogeneDB ID: | retro_ocun_1450 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:56480049..56480356(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2V1 | ||
Ensembl ID: | ENSOCUG00000026172 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:HGNC Symbol;Acc:12494] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 70.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LGVKVPRNFRLLEELEEG-QKGVGDGTVSWGLEDDEDMTL-TRWTGMIIGPPRTIYENRIYSLKIECGPK |
LG.K....F..LEELEEG.QKGVG.G..SWGL..D......TR.T..IIGPPRT.Y.NRIY.LKIECGPK | |
Retrocopy | LGSKTTCTFQQLEELEEG<QKGVGEGSISWGL-EDDEDVT<TR*TEVIIGPPRTFYRNRIYNLKIECGPK |
Parental | YPEAPPFVR-FVTKINMNG-VNSSNGVVDPRAISVLAK |
YPE.PPF.R..VTKI.MNG..N.S.GVVDPRAI.VL.K | |
Retrocopy | YPEVPPFCR>YVTKITMNG<INGSHGVVDPRAI*VLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 24 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .34 RPM |
SRP017611_liver | 0 .00 RPM | 6 .24 RPM |